G1087512


Basic Information

Item Value
gene id G1087512
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 53729574 ~ 53730386 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1237178
cgaagacatcaaaactaggaaataacaaatggaaccatgtagtaacaaaaaaaaaaaaatgttaaatcaaaatatattttatatttgagattcttcaaagtagccactctttgccttgattacagctttgcacactcttggcattctctctaccagcttcatgaggtagccacctgtaatgcatttcaattaacggtATAAATTAAACCGGTATAAATTGAACCTCATATCCAACTCGTGGACCTGTTAGTTACCTCTCTGCTTGGAGGTCTTCTCCAGGTCGTCCTGCAGCTTGCCCAGGTCCTGCTGGAAGTCCTGACTGCCACACACGTTGAACATCTTTTCCTCATAGCTGGCCAGCTGCTGCTCCTTCCTCCTGATCTCTGCTGTGATGTGGCTCTTATTCTGCTCCCCCGACGCCAGCTCCTTATTGAGCTTGGCTAGTTTCTCCCTGGTGGAGTTGATCTCTTTGGACTTGGAGTGGATCCagtcctccagctccctcttctTAGGGAAGTGACCCAGCAGGGACACCAGATCCTCACTGTGCCTTGACTTGATTTTCCTCACCTGATCTTCTTTATCTGtctgagggaagaagagaggccCACAGGCTCATGTTACCACTGGCCAGGTTGAGAGTGACCTCTTGTTCCATGTCATTGGTCAGGTTTGGGTCACAAACTAAACAACGAAGAGTACATCttgt

Function

NR:

description
DNA repair protein RAD50

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1237178 True 709 lncRNA 0.46 2 53729574 53730386

Neighbor

gene id symbol gene type direction distance location
LOC110537776 LOC106567605 coding upstream 36944 53690304 ~ 53692630 (+)
LOC110537774 NA coding upstream 48443 53662525 ~ 53681131 (+)
LOC110537771 LOC106567489 coding upstream 309729 53330181 ~ 53419845 (+)
LOC110537768 LOC106567493 coding upstream 596649 53004829 ~ 53132925 (+)
LOC110537765 LOC106567495 coding upstream 868302 52851651 ~ 52861272 (+)
LOC100301661 LOC106567454 coding downstream 71276 53801662 ~ 53804908 (+)
LOC110538908 LOC106603872 coding downstream 523333 54253719 ~ 54283905 (+)
ppp2r2bb LOC106567445 coding downstream 628887 54359273 ~ 54460602 (+)
LOC110537791 LOC106567438 coding downstream 1149287 54879673 ~ 54888634 (+)
LOC100136153 LOC100136153 coding downstream 1316774 55047160 ~ 55052488 (+)
G1087459 NA non-coding upstream 106454 53622389 ~ 53623120 (+)
G1087458 NA non-coding upstream 107451 53621834 ~ 53622123 (+)
G1087449 NA non-coding upstream 118305 53611064 ~ 53611269 (+)
G1087361 NA non-coding upstream 121726 53543187 ~ 53607848 (+)
G1087312 NA non-coding upstream 235683 53493678 ~ 53493891 (+)
G1087514 rad50 non-coding downstream 10118 53740504 ~ 53751607 (+)
G1087637 NA non-coding downstream 62878 53793264 ~ 53793527 (+)
G1087649 NA non-coding downstream 77013 53807399 ~ 53809011 (+)
G1087652 NA non-coding downstream 79813 53810199 ~ 53810423 (+)
G1087665 NA non-coding downstream 95613 53825999 ~ 53826202 (+)
G1086237 LOC106567502 other upstream 1072079 52649604 ~ 52657495 (+)
G1082266 NA other upstream 4048770 49679023 ~ 49680804 (+)
LOC110537713 LOC106567542 other upstream 4429227 49262142 ~ 49300347 (+)
G1081353 NA other upstream 4982075 48746955 ~ 48747499 (+)
G1077322 NA other upstream 7720965 46004151 ~ 46008609 (+)
G1087914 NA other downstream 379304 54109690 ~ 54148962 (+)
G1091217 NA other downstream 2995221 56725607 ~ 56726003 (+)
G1091235 NA other downstream 3022032 56752418 ~ 56752947 (+)
LOC110537831 dhx33 other downstream 3385439 57112902 ~ 57118165 (+)

Expression


Co-expression Network