Gene
RNA
| Item | Value |
|---|---|
| gene id | G1087514 |
| gene name | rad50 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048576.1 |
| NCBI id | CM023230.2 |
| chromosome length | 102853256 |
| location | 53740504 ~ 53751607 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| rad50 | Predicted to enable G-quadruplex DNA binding activity; double-stranded telomeric DNA binding activity; and single-stranded telomeric DNA binding activity. Predicted to be involved in chromosome organization and nucleic acid metabolic process. Predicted to act upstream of or within DNA repair and telomere maintenance. Predicted to be located in nucleus. Predicted to be part of Mre11 complex. Predicted to be active in condensed nuclear chromosome. Human ortholog(s) of this gene implicated in transitional cell carcinoma. Orthologous to human RAD50 (RAD50 double strand break repair protein). |
| description |
|---|
| unnamed protein product |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1237183 | True | 933 | lncRNA | 0.50 | 6 | 53740504 | 53751607 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110537776 | LOC106567605 | coding | upstream | 47874 | 53690304 ~ 53692630 (+) |
| LOC110537774 | NA | coding | upstream | 59373 | 53662525 ~ 53681131 (+) |
| LOC110537771 | LOC106567489 | coding | upstream | 320659 | 53330181 ~ 53419845 (+) |
| LOC110537768 | LOC106567493 | coding | upstream | 607579 | 53004829 ~ 53132925 (+) |
| LOC110537765 | LOC106567495 | coding | upstream | 879232 | 52851651 ~ 52861272 (+) |
| LOC100301661 | LOC106567454 | coding | downstream | 50055 | 53801662 ~ 53804908 (+) |
| LOC110538908 | LOC106603872 | coding | downstream | 502112 | 54253719 ~ 54283905 (+) |
| ppp2r2bb | LOC106567445 | coding | downstream | 607666 | 54359273 ~ 54460602 (+) |
| LOC110537791 | LOC106567438 | coding | downstream | 1128066 | 54879673 ~ 54888634 (+) |
| LOC100136153 | LOC100136153 | coding | downstream | 1295553 | 55047160 ~ 55052488 (+) |
| G1087512 | NA | non-coding | upstream | 10118 | 53729574 ~ 53730386 (+) |
| G1087459 | NA | non-coding | upstream | 117384 | 53622389 ~ 53623120 (+) |
| G1087458 | NA | non-coding | upstream | 118381 | 53621834 ~ 53622123 (+) |
| G1087449 | NA | non-coding | upstream | 129235 | 53611064 ~ 53611269 (+) |
| G1087361 | NA | non-coding | upstream | 132656 | 53543187 ~ 53607848 (+) |
| G1087637 | NA | non-coding | downstream | 41657 | 53793264 ~ 53793527 (+) |
| G1087649 | NA | non-coding | downstream | 55792 | 53807399 ~ 53809011 (+) |
| G1087652 | NA | non-coding | downstream | 58592 | 53810199 ~ 53810423 (+) |
| G1087665 | NA | non-coding | downstream | 74392 | 53825999 ~ 53826202 (+) |
| G1087681 | NA | non-coding | downstream | 76806 | 53828413 ~ 53828613 (+) |
| G1086237 | LOC106567502 | other | upstream | 1083009 | 52649604 ~ 52657495 (+) |
| G1082266 | NA | other | upstream | 4059700 | 49679023 ~ 49680804 (+) |
| LOC110537713 | LOC106567542 | other | upstream | 4440157 | 49262142 ~ 49300347 (+) |
| G1081353 | NA | other | upstream | 4993005 | 48746955 ~ 48747499 (+) |
| G1077322 | NA | other | upstream | 7731895 | 46004151 ~ 46008609 (+) |
| G1087914 | NA | other | downstream | 358083 | 54109690 ~ 54148962 (+) |
| G1091217 | NA | other | downstream | 2974000 | 56725607 ~ 56726003 (+) |
| G1091235 | NA | other | downstream | 3000811 | 56752418 ~ 56752947 (+) |
| LOC110537831 | dhx33 | other | downstream | 3364218 | 57112902 ~ 57118165 (+) |
