G1087649


Basic Information

Item Value
gene id G1087649
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 53807399 ~ 53809011 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1237326
gatcagagggagtagggatgaccagggatgatctcttgataagtgcgtgaattggaccattttcctgtcctgctaagctatcaaaatgtaatgagtgcttttgggtgtcagggaaaatgtatggagtaaaaagtacattattttctttagataCACATAGAAACTAgtttagtactttaaagtatttttcttaatactttacaccactgcatagcctgtatcacaaccagccgtgattgggagtaccatagggtggcacacaattggcccagcgttgttcgggtttggccggtgtaggccgtcattgtaaatattaaacaactgtcttgcctagttaaataaaggttaaataaaaaataaaaataacagttGTTGACCAATATTGACCTGTCTCTCCATTATAAACTATATTCTTTGCTGATAATTTATTTTCTAGCTATCTTCAAACATGAGTTCACTCAAATACACAATTAAAAAAGAACTCCACATATGCTGAGTTGCTTTGGGAAATATTCCAGAAGACTGTCTTTGTCTGCTCAGCGCTCAGCCCGTCAGGCCCTGTCTACTCAGTGGAGAAGCTGTTATTCAGTTTCATTAGTAAACAATCCTCCCCTGCTGTTTCCCCCTGTGGTTCTATCACAACGACACAACATGCACACCTGGTCCTACGACTAGGTAATTCGGCCTGCATAAAGATGCCCAaaataaacaaatgtgtgtgACGTCCAATGCTGTGAGAAGACAATGTTTTATAAAGTTGTTTCATTTCCTTAGCCATATGAACAAGTGTGCCACTGGCATGGCTCTTTGAAGTATCTGAGGCTTGTCCAGATGTTTTTGGTTTTATACACTTATACAGATCAATATTTATTTTCTGTTCAGATGGCTTAACTATCTTGCTTGTTGCTGTATCTGTATCATTCCTGAGATCTTAGCCTGCCAAGTGTACCAGTCATGTTCAACTCTACTCACCACAGTAAACTGCCACGTTATGATTTGGGGGCATTGCATTGCTAAATGACAAAAGGAGAATGCCTTGCTTGCTCAAATGTCTTTCCTAGGGGTGCCCCACAGGTTATGAGAAAGAACTTGTGACAGCTTCATGTTCTGTCTAGATGTTTGTTGTGACATCACATGTAACAGTGCTTTTGTTAACCTATCTGACAGCAAAGCGTTCCTTTGCATCAAATGACAAACAGGGCAAGATAACCGTCACTGTCCTCCTATGACATTAAACACTATCCTTTTTGGATGGGTCCAATTACAGGGGTGTTGTTGTCAAGCTCATTTTATGAAGATGCTTTATTAACGATGGCATCCCTACCTCGACATTCAACAACACTTCATGGACATAAAATGAAAAACATTATTGTACAATGTTCAAATGTAGATGTAAACACAAGtgctttttttaaaattattttggaATCCTTAATTGTGAGTAATTGCATGTGCTGTTTTTCAGTGTGGGTTTATTGAAAGGTCAAGGCACTCATCAGTCAGATGTTCTGCAGTTGTCAAGGTTTTGAAAAATAATAATCCCCAAGTTTATTAGAGTGCCTAGTTTACGGTTCTAACAAAATGTGCCCTATACTACTTGCAAAATAAAAGTa

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1237326 True 1613 lncRNA 0.39 1 53807399 53809011

Neighbor

gene id symbol gene type direction distance location
LOC100301661 LOC106567454 coding upstream 2491 53801662 ~ 53804908 (+)
LOC110537776 LOC106567605 coding upstream 114769 53690304 ~ 53692630 (+)
LOC110537774 NA coding upstream 126268 53662525 ~ 53681131 (+)
LOC110537771 LOC106567489 coding upstream 387554 53330181 ~ 53419845 (+)
LOC110537768 LOC106567493 coding upstream 674474 53004829 ~ 53132925 (+)
LOC110538908 LOC106603872 coding downstream 444708 54253719 ~ 54283905 (+)
ppp2r2bb LOC106567445 coding downstream 550262 54359273 ~ 54460602 (+)
LOC110537791 LOC106567438 coding downstream 1070662 54879673 ~ 54888634 (+)
LOC100136153 LOC100136153 coding downstream 1238149 55047160 ~ 55052488 (+)
LOC110537795 ablim3 coding downstream 1256110 55065121 ~ 55209632 (+)
G1087637 NA non-coding upstream 13872 53793264 ~ 53793527 (+)
G1087514 rad50 non-coding upstream 55792 53740504 ~ 53751607 (+)
G1087512 NA non-coding upstream 77013 53729574 ~ 53730386 (+)
G1087459 NA non-coding upstream 184279 53622389 ~ 53623120 (+)
G1087458 NA non-coding upstream 185276 53621834 ~ 53622123 (+)
G1087652 NA non-coding downstream 1188 53810199 ~ 53810423 (+)
G1087665 NA non-coding downstream 16988 53825999 ~ 53826202 (+)
G1087681 NA non-coding downstream 19402 53828413 ~ 53828613 (+)
G1087721 NA non-coding downstream 50623 53859634 ~ 53859836 (+)
G1087730 NA non-coding downstream 60755 53869766 ~ 53870215 (+)
G1086237 LOC106567502 other upstream 1149904 52649604 ~ 52657495 (+)
G1082266 NA other upstream 4126595 49679023 ~ 49680804 (+)
LOC110537713 LOC106567542 other upstream 4507052 49262142 ~ 49300347 (+)
G1081353 NA other upstream 5059900 48746955 ~ 48747499 (+)
G1077322 NA other upstream 7798790 46004151 ~ 46008609 (+)
G1087914 NA other downstream 300679 54109690 ~ 54148962 (+)
G1091217 NA other downstream 2916596 56725607 ~ 56726003 (+)
G1091235 NA other downstream 2943407 56752418 ~ 56752947 (+)
LOC110537831 dhx33 other downstream 3306814 57112902 ~ 57118165 (+)

Expression


Co-expression Network