G1087914


Basic Information

Item Value
gene id G1087914
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 54109690 ~ 54148962 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1237606
TACGGGTCACAGCTTGCTTTATTTTTCATCTCAAACCTATGGGATGCACACTGAGAAACTACTCCAGGCTTTGCTACATATTATCTACCAAAATCACAATAATTCAAAAAGCGTTTTTtgacaacataaaaaaaaaaatggtaacaGAACAAAACTACGCAGAGAAGCTTATCTAAAAATGTATCTAAACATTGCAGGACCATGAGTTTTAGCAAAGACAGTGATATGCACACTGTTCCCCATAATCTCCACGTCTTGGGTATTTATCCCTAGCTAGGTCCACATATTCATGTTGTGTACAGTATCTGGACTGTTTTCTAAAGCAAAACATAACTGGCAATAAGgccatttttttttctcccattgaATTATTTTTAAAAACGTCATGAAACCTTGCTACAACAATGCACACACAGAAACTAGCATGAATGCATTGGGCTTTATACAGCTTGCCTCAATGACGGAACtatgacatacagtacagtaccttgAAAAGTGGTCAGTTATCAAACCGTCATGATAGAGAATATTTAGCTAGCTTTGCTCAGATAATTCAGGAAATCTATTGTATACTGGTGTTCATGTTCAACTTCCATAGATGTACAAATCGATACTCACTTGGGAAAACCTTTTTTATAAGAATGTATTCCAGTATGATTATGCACAGAGTGACATAGATAAGCCTGGACTTGAATCAGAAACATGTTCCTAGTGTTTATCATTACATGCCTTCCACTACACACAGTCATGACACTACAGGAGGCCTAGCAGATAACAGGCGCACACATCTGAAAAATGAAGTTTGACTCTTGTTAGTAGCAGCTCAGAAAAACTGACTCTGAGTGGATTTCAACATTGACTCGTGCCTTTGTACAAACAGTTGTTTGATATCAAATACAAAACAGCAATAACAAGTTTTAAAAAATAGTGAtgataaataataaatacatagaGGGATGAGAACAGAGACAGCCGGGAGAGAAGGGAGATTCAGATACGGGCAGGAAGGCGGGTGTGAGAGTACTCTGAGCCGAGCAAGACACTGgggagacagacactccctgtTAAAAGCTTGGAATGGAGACGGGCAGACGAGATGGGGTTGGTGGGAGGGTTGGGCAGGCAGACTCAGTGCCCGTCTGTGTTGGGCGGCTTGGCGTCGTGCGGGGCAGCGCCAGCAGGGAGCCAgggagagacggagcgagagGTGGTCTGCTTGGCCATGCTGTAGTGGCTGATCACCGTATAGAAGCGCCCTCGGGAGTTGGCATCCTGAGCAGTGTAGTAGGCCTCCAGAGAGGCAGGGATGCACCGCTTATgctgcagagggggagagagggagagagtggggagggttcAATATCATACTCTCCTCATTTACACACTGTTGCACAGCACTAAGGGCTTTTTCTGGTGAAGAGTTGTTTTTTTTTCCTCTGGAGAGTGCAGTAGCTGTGTCTAAATTAGATCTACTTCAGCTAACATGCCTGTAGTCCACAGCAAAAACCTCTAAAGGTGACTGTACAGACAATTAACCAGTGTAGTTGTAACGctctgtcccaaatagcaccctattctctatgcagtgcactacttttgaccagggtatatatggctctagtcaaaaggaatacactatatagggaatagggtgccatttgggcccaCTCACCTTGTATATGAATCCGTCTGGGCAGCTGTGGTCGTAGGTAAACGCCTTGTACACCACCAGGAACACTATGCATGCCAAGAAGGCCAAGGCCAGGACTATGAGGATAGTGACCTAGTACCTTGATTCTCTCTGATACTCCATCAGTGAAGCTGATGGTGAACTCCTCCACCTTGGGCACCTTCAGCTTGGTTTTCTTCTGGTCCGTTTGGTACTCAGTCCGTGTCTTCACCACCACCTGCTTGTCTGGGGCTCCATACTGGAGATTACCGACATCCAGAGGGGTGATGAGCGGCACGTTTTGGAAGCCATCCTCCACACTGACCGGTTTAGCGCCTTTGTCTTGTAGATTGCTCCCCAGTTTAACCATCTTTACCAATATAAAAATAGTGCACTTCTCAAGCAGATGCTGTAAATATGACAGACACTGTTAGTTAATTGTACATGTCTAATTTATCATACAATAAAACATCTACTGAGCACGcaaatcaatgttttttctttgaaCATTAAATTACATACATCGGAT

Function

NR:

description
neuron-specific protein family member 1-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1237606 True 2198 TUCP 0.44 3 54109690 54148962

Neighbor

gene id symbol gene type direction distance location
LOC100301661 LOC106567454 coding upstream 304782 53801662 ~ 53804908 (+)
LOC110537776 LOC106567605 coding upstream 417060 53690304 ~ 53692630 (+)
LOC110537774 NA coding upstream 428559 53662525 ~ 53681131 (+)
LOC110537771 LOC106567489 coding upstream 689845 53330181 ~ 53419845 (+)
LOC110537768 LOC106567493 coding upstream 976765 53004829 ~ 53132925 (+)
LOC110538908 LOC106603872 coding downstream 104757 54253719 ~ 54283905 (+)
ppp2r2bb LOC106567445 coding downstream 210311 54359273 ~ 54460602 (+)
LOC110537791 LOC106567438 coding downstream 730711 54879673 ~ 54888634 (+)
LOC100136153 LOC100136153 coding downstream 898198 55047160 ~ 55052488 (+)
LOC110537795 ablim3 coding downstream 916159 55065121 ~ 55209632 (+)
G1087730 NA non-coding upstream 239475 53869766 ~ 53870215 (+)
G1087721 NA non-coding upstream 249854 53859634 ~ 53859836 (+)
G1087681 NA non-coding upstream 281077 53828413 ~ 53828613 (+)
G1087665 NA non-coding upstream 283488 53825999 ~ 53826202 (+)
G1087652 NA non-coding upstream 299267 53810199 ~ 53810423 (+)
G1087944 LOC107598339 non-coding downstream 9827 54158789 ~ 54164032 (+)
G1087945 LOC106567449 non-coding downstream 16929 54165891 ~ 54182385 (+)
G1087954 NA non-coding downstream 37219 54186181 ~ 54186467 (+)
G1087960 NA non-coding downstream 45140 54194102 ~ 54194307 (+)
G1087961 NA non-coding downstream 45679 54194641 ~ 54194909 (+)
G1086237 LOC106567502 other upstream 1452195 52649604 ~ 52657495 (+)
G1082266 NA other upstream 4428886 49679023 ~ 49680804 (+)
LOC110537713 LOC106567542 other upstream 4809343 49262142 ~ 49300347 (+)
G1081353 NA other upstream 5362191 48746955 ~ 48747499 (+)
G1077322 NA other upstream 8101081 46004151 ~ 46008609 (+)
G1091217 NA other downstream 2576645 56725607 ~ 56726003 (+)
G1091235 NA other downstream 2603456 56752418 ~ 56752947 (+)
LOC110537831 dhx33 other downstream 2966863 57112902 ~ 57118165 (+)
LOC110537841 mtmr4 other downstream 3750509 57893341 ~ 58071571 (+)

Expression


Co-expression Network