G1088887


Basic Information

Item Value
gene id G1088887
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 55193535 ~ 55196940 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1238657
aggagtgatggttgctgataatgagcttctgtacgcctatgtagatgtaccattaaaaatcatctgtttccagctacaatagtcatttacaacatgaacaatgtctacactgtatctctgatcaatttgatgttatttggacaaatggacaaaaaaaacgtgtttttctttcaaaaacaaggacatttctaagtgaccccagacttttgaacggtagtgtacacgGTGAAACACGCTGCTGCTTCTTTATGGGACCAAACTCTttcaaaaacgtttttaatttaAACGTTTTTAAAGTTTAAAACATAGAGATCAGCCTGATAATGGAGGCAGCTGAAGTCTGAATCCTGTGAGGGTGTAAGACAGTCAATTGACAGACTTGTTGGGAAATGTTTGGCGAGTAATCTGGCTAGCCTAGCTATACATTTAGCTGGCTATCTACCTCGAACGGCAATAACAGATACACTTAACTGCAGTGGTGAGAAAAGCATGGAGACTAATTTATTAAAGAAAGAAAGCTCTAATAGCATGGCTAATTTCATGACGGAGATAAGGAGTCTAGGTACAAaaattgaagaagaaaaaaagaaagaagaaatGAAGCTGTGTATTGAAAAAGGAATGAATGGTAAAGTTGACAGTTTACGTGTGTCTTTGGAGAAAGACATTTTTGCGCTTTGAACATAGGGAGTCAGATTATAGTTTTGTTGTGTTTTCATGCTATTTGCCACCTGAACAGTCCACAGGGGTTAGAGATGCATCCTCCTTCTATAGTCATTTGTTAAGTCAAGTATACCTATATACAGAAGAAGATGCTATTTACATATGTGGGGATCTTAACAGTTGAATTGGGAGGTTAGATGACTATATAAATGATATTGATGATATTCCATCGCATGTTGCTTTGGATGACTTTGATAATCATCATGGAGAGAAACCCTATTAGAATTCCTTCAGGACTCTAAAAGGTCATTAATGGAAGGATATGCCTCTTAAGCGATAACTTTACATCCATATCTGGCAAAGGAAAAGCTGTGGTGGACTATATAGTTACCCTCCACGACTGTCTAGAAACTTGTTTGGAATCCTGATCATTCAATTTTATTTATGATATTTTCTGTTGGCCACTAACTTCACTCAACGAAGTACTGCTGTGCATCACACGGGGCAAATGATATACGTTTACCCCGCATAGGCCTAAATGTAAGAAAATAAATGTGCCACATTACTTTCTATGTTCTGAAATGGAATGTAGAGCTCTGGTGGAACTCATTGAAACTCTGCAAAGATGCCAAGAAATATTTGATTTAGATGTGTGGTATGAACATTTTTGTGATATTATATTTTTTGAAAGTGGAAAATATGTGAATAAAGAATACAGCCCCAGGTCCAGGAAAGTTTACAAGTGGAACAAGCCTCATTGGAATGATGAGTTAAGGGATCTATGGTCTGTAATGCGCAAGGCTGAGTACTTATTTTAACAGTGTAAAGATAGGACTACAAGAGAACAGTGTAGGAAGGAATTTAAGAAAAAAACAGCAAGTGTTTGATAAAAGACTGCGCCTATTCAAacagagatatcagagagggcagttattACACCTTGAGGAGAGACGGACAAGAAATCCTCAACTGTTTTGGAGCCAAATAAACAAGTTAGAACCAAAATGACATAAGAAACTTCCAATGGAAGTCAGGGGGAGAAGGGGTTTGCTTGTTGGTTCAAATTTTGAGGAAGAATTTTATAAGGGCATTTGTTCCCTGAGAAGTAAAATGGAAAATACAACGTTAGAACCCTCTTATATATGTAACAAATACTTCAATGAGGAGCTGTTCGTGGCAGAATATAAGAAAAATAATTGAAAAGTGTTTGGAATTGATGAACTGCCTAATGAGGTTTTAAAATCCCCTAAATTAATTAATATGATTTGCTCCAAATGTGTTTTGAGTACAGTATACTGCCATCCATTTGGTATAAGTCTATAGTGAATCCCATTCCCAAATCTTCAAGAAATGGCCTGAGAGTGCCACAACTACAGAGACATGTGTTTATTAAGTACGGTTTATAAATTATATCATCCATCCTCAACAATAGGCTAATGACCTTTTTGGAGGATCAAAACATGCTGGTGGAAGAAGAAAATGGTTTTGGTAAATCCTGAGCCTGAATAGATAATATGTTCTCGGTCTGCACAATACTCAGAAATTGATCACGCGAAGAGAATCCTACTTTTGCATGTTTCATTAATTTCCAGAAAGCTTTTGATTTTGGAAATAGGGATCTTTTAGCCTATAGTTTGTTAGAGACAGAGATTGATGGGACATACCAATTGCTTGTGTGCATGTTAATGAATATCGTACAGATTGGTTTCACACACCCTCGGGTGTAAAACAAGGAGACGCCTTATCACCAACTTTATTTGCCATGTTTATAAATAATTtggcaaaataaaataaacagttAAATATTGGAGTAAGATAAGTTGATGAAATGCTAAATATGAAATGCTTTTATATGCTGATTAAATTATTTTGATGGCAGAAACTGAACAAGACCTGCAGAACATGTTATAATGTGCTGTCAATTGGTGTATAAGATGGAGACTCATGATTAACCAGacaaaacacagataatgactttTAGAAAACCAGTTACTAAGAGAAATGTTTTTCAGTTTCGTTTGGGTGAAGATTGTGATTTACCTGATTTATTTGATATTAATAGTTAACGATTATTTACTTAACAAATAGAAGGACATTTCTGTTCTGTTTAATTCTGTGTTTCTGTAAAGAGATGGTTTCCACTCTAGCTTCCTGCAGTTAGTCTGGGCGTATGGTCAAGGAAATGGGTTTTGCTAGAGATAGCTTGAGCTGACAATGACTTGGTGATAAAAACCTAAAGCTGGCATTCCATACACAAGACATGGTGTCTGTGACCCGGGATAGAGATAGCCTGGAAGAGTTTAGAACAATCCCTCGTCGTCTCATTttcctggcatctgggaaactaagccgGGTTGTGGGTAAAACAACATCCCGTGCAGAAAACCAGGAAATGGACCAACATGGCTTATGAAAGGGGTGGAACCAGCCCTGACTAAGCATTTTATGTCCTATATAAGATCTATATTTTTTCATTATCAGTTAGTCAAGACTGTTGGGTTGACTAgtctcattattgcaataatgaatcgatattgaataaagatgattgtttgaagaaatgacagtctctctcacttgattagaatattccaaGACAAGACATGCTTGAGTTTAATAGCAATTATAAATATTTGCGTCTTTTTATTGATGAACTTATTACCTTTCTATATGGAACATCTGCCCTGGCCGACTCAGCAAGTAGAGCTCTTGGGGAAGTTATA

Function

NR:

description
WD repeat-containing protein 3 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1238657 True 3386 lncRNA 0.36 2 55193535 55196940
Loading

Neighbor

gene id symbol gene type direction distance location
LOC100136153 LOC100136153 coding upstream 141047 55047160 ~ 55052488 (+)
LOC110537791 LOC106567438 coding upstream 304901 54879673 ~ 54888634 (+)
ppp2r2bb LOC106567445 coding upstream 732933 54359273 ~ 54460602 (+)
LOC110538908 LOC106603872 coding upstream 912578 54253719 ~ 54283905 (+)
LOC100301661 LOC106567454 coding upstream 1388627 53801662 ~ 53804908 (+)
LOC110537794 afap1l1 coding downstream 12790 55209730 ~ 55247859 (+)
LOC110537796 LOC106567431 coding downstream 60494 55257434 ~ 55270161 (+)
LOC110537797 nola2 coding downstream 84791 55281731 ~ 55285435 (+)
LOC110537800 LOC106567427 coding downstream 179081 55376021 ~ 55398512 (+)
LOC110537801 LOC106603903 coding downstream 202035 55398975 ~ 55413298 (+)
G1089056 NA non-coding upstream 79022 55114194 ~ 55114513 (+)
G1089013 NA non-coding upstream 165647 55027664 ~ 55027888 (+)
G1089011 NA non-coding upstream 168462 55024808 ~ 55025073 (+)
G1088992 NA non-coding upstream 192104 54992764 ~ 55001431 (+)
G1088883 NA non-coding upstream 274539 54890174 ~ 54918996 (+)
G1089159 LOC106567483 non-coding downstream 127669 55324609 ~ 55325524 (+)
G1089196 NA non-coding downstream 189218 55386158 ~ 55387520 (+)
G1089206 NA non-coding downstream 218386 55415326 ~ 55415809 (+)
G1089209 NA non-coding downstream 223931 55420871 ~ 55425203 (+)
G1087914 NA other upstream 1044573 54109690 ~ 54148962 (+)
G1086237 LOC106567502 other upstream 2536040 52649604 ~ 52657495 (+)
G1082266 NA other upstream 5512731 49679023 ~ 49680804 (+)
LOC110537713 LOC106567542 other upstream 5893188 49262142 ~ 49300347 (+)
G1091217 NA other downstream 1528667 56725607 ~ 56726003 (+)
G1091235 NA other downstream 1555478 56752418 ~ 56752947 (+)
LOC110537831 dhx33 other downstream 1918885 57112902 ~ 57118165 (+)
LOC110537841 mtmr4 other downstream 2702531 57893341 ~ 58071571 (+)
LOC118937686 NA other downstream 3019215 58216142 ~ 58222215 (+)

Expression

G1088887 Expression in all Baseline Samples

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G1088887 Expression in each Bioproject

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G1088887 Expression in each Sample
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Co-expression Network