G1089281 (LOC106567478)


Basic Information

Item Value
gene id G1089281
gene name LOC106567478
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 55519574 ~ 55521811 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1239076
ccgcactatgggactcccaatcacggccggtagTGACACATCCTGGAGaatactgtatgtgtaatgtttattaGATTCTAAAAGCAATGACCTACTGGCCAGTTAGGTCATCTCAAGTCATATTACTTAACGACACAGACAAGAGTAGCAATGGCTCACAAGATGTTCACATGAGTGTTCAGAAGAAGCCAGTTTGTTTCACTTCCTCAGAGTGTTGTGTTCTTGGGTCTCATTAGTCAAAGTTTCAGTATTACCTCAGGTCAGTTGCCATAATGTTTTTTGCTAATTAGGCAGACATGTCTCATGGAGGGACATTGCACTTTGACTCAGTTATTCTATTGGCATATTGTGGTATTTCATCTACTCTTGTCAGTTGGAAGAAATACAGTCATGATTAGCATACTTACATTTGGACTACCGTAGCAATTGTTTTCCATCGCTTTCTCAAGACGACAAGTACAGACACAATCACCACCCCTGTCAGAACCAGTAGAATGGACACCAGGATCACAGGCAGCTTATGACCTGTCATCTGCTCCTGTTAACATCACAGATTAAAACGACATCTCAGTACAGTACCAGATCACACAGTGGGATTTCTTATTTGCCAGAATTTGCAGTGTGGAACTATGCATACCAAAATTGATTCGCTGTAAAGTGGCGTGGATGTGTCTGAATACTCTGTGGAATTTGTGGTCACATGACAGTGTGTGTGGTTGTCCATCGTCTGTTGAGTTATGATCACATTAGCCGGTGTCTGAGATGTTGTCGGGACAGGTGCTTTCTCAATTTTCAAGTTGACATGATATTTCTCATCATTCCACAATCCGTGAACATGCACACGACAGCCGTATCGTCCAGAGTCTTTTACAGTGACATTGAGGATTGTGAGAGAGACATCCCCTGTCTTCAGCACCCCGAATAAATGATATCTAACCGAAGATCTCCATGTCACTTTAGTGCCATCAGATGAGATGATTTCCTTGTTACAACCAGAGTTCGGTATGGTTCCTCTCCCCCAGCATATGGCTGATACACCTTGCTTTATGGTGTTATATTTACATGGCAGAGTGACATTCTGGCCCTCAATACCAATGACTTTTGGGTCAATGCATTCACTGACTGAAAGTAGACAGAGGAGAAACCAGCCTAAAACACAGGGAGTCTCCATGATAGGGTCATATCAC

Function

NR:

description
T-cell immunoglobulin and mucin domain-containing protein 4-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1239076 True 1187 lncRNA 0.43 5 55519574 55521811

Neighbor

gene id symbol gene type direction distance location
LOC110537802 LOC106603906 coding upstream 64238 55451594 ~ 55455336 (+)
LOC110537801 LOC106603903 coding upstream 106276 55398975 ~ 55413298 (+)
LOC110537800 LOC106567427 coding upstream 121062 55376021 ~ 55398512 (+)
LOC110537797 nola2 coding upstream 234139 55281731 ~ 55285435 (+)
LOC110537796 LOC106567431 coding upstream 249413 55257434 ~ 55270161 (+)
adra1ba LOC106567426 coding downstream 78541 55600352 ~ 55616323 (+)
ttc1 LOC106567425 coding downstream 103550 55625361 ~ 55643340 (+)
LOC110537810 LOC106567475 coding downstream 144862 55666673 ~ 55668162 (+)
prob1 LOC106567422 coding downstream 182768 55704341 ~ 55714760 (+)
LOC110537815 NA coding downstream 270302 55792113 ~ 55846902 (+)
G1089284 LOC106567478 non-coding upstream 4443 55513630 ~ 55515131 (+)
G1089209 NA non-coding upstream 94371 55420871 ~ 55425203 (+)
G1089206 NA non-coding upstream 103765 55415326 ~ 55415809 (+)
G1089196 NA non-coding upstream 132054 55386158 ~ 55387520 (+)
G1089812 NA non-coding downstream 147793 55669604 ~ 55670058 (+)
G1089813 NA non-coding downstream 150302 55672113 ~ 55672822 (+)
G1089814 LOC106567423 non-coding downstream 151973 55673784 ~ 55674562 (+)
G1089815 NA non-coding downstream 153578 55675389 ~ 55675627 (+)
G1089817 ccnjl non-coding downstream 155153 55676964 ~ 55677399 (+)
LOC110538908 LOC106603872 other upstream 1238853 54253719 ~ 54283905 (+)
G1087914 NA other upstream 1370612 54109690 ~ 54148962 (+)
G1086237 LOC106567502 other upstream 2862079 52649604 ~ 52657495 (+)
G1082266 NA other upstream 5838770 49679023 ~ 49680804 (+)
LOC110537713 LOC106567542 other upstream 6219227 49262142 ~ 49300347 (+)
G1091217 NA other downstream 1203796 56725607 ~ 56726003 (+)
G1091235 NA other downstream 1230607 56752418 ~ 56752947 (+)
LOC110537831 dhx33 other downstream 1594014 57112902 ~ 57118165 (+)
LOC110537841 mtmr4 other downstream 2377660 57893341 ~ 58071571 (+)
LOC118937686 NA other downstream 2694344 58216142 ~ 58222215 (+)

Expression


Co-expression Network