G1089856 (pfd1)


Basic Information

Item Value
gene id G1089856
gene name pfd1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 55726068 ~ 55743213 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1239694
CTCGTTTCATTACCCATTTTTATTATCATATCAACAAACTGCAGcagtaacaaacaaaaaaagttgAGAAGTTAAAATGACATTGCAAGACACAGTCCAAGATGATTATTTAATGTGAAGATACAGTCCCTTCAGATTGTATAACTTAAGTAACAGGGCAGATGTTACAGTACTGGCAGAGAAGCAAGAAAACCTCAGATTCCATATGGAGAACAGCACCTGCTTGGTCAGTCATTaaggtttactgtagctggttaTAACATACACAAATTATATCAGAGGGAAGTCACAAATTAGCGAAAGTATGCGTTTGTATTGGTGTTTCAATCTCACTGGGCCCTCCTGGACATGAGCATTTCTCTGATGTTGTCCTCAGCATCCTTCACAGTGCGCTCCAGGTACGTCTTCTTTTGCTCAAGCTCCTTAATTTTCTCATCTGCTGTCTTCTGTTTGTAAGTCAGCTGTGTGTTGATATCTTCTTTAGACTGCAAGATGAaGTCCTACTCCTTCATACATGCGGGTGTTGTCTGGTAGGGTTTTTATTTCTGCATGTGTCAGGTTGGCATGTTTCTTCATGCGAGTGAGCTGGTCGATCTGAAGATCTGCCAGTTTCGCCTTTTGTTGTGTGTCAATCATTTTCGATTGCAGCTCTGCAAAGGCCTTCTTCAGCTCTAAATCTATGGGGGCCGCCATGTTGAACACGAGAACGTAACAACGAACCACGCCCATAAAAGTATCTTACAGTTTCTGCCTTCTTCAGCCGGCCCAGAGACGTACTTTTACCATGCATCATTTTCTTTGACAGATGGATTTCTGAAAAACATTTGGTTTAATGATTATGGCTGGTATAATGTCATATTTTGCCAGCATCATCTAAGCTGTAATACGTTATGTTCCCTGTATGTGAGAGTACTATGGCCTCTGCCTTGAGGTCTATACCTTTATGGCACAGGTGGTAgtgaatcaaataaaatgttattggtcacatacacatatttagtggATGTAGCGAAATTATTATGTCCCTTGCTCCAactatgcagtaatatct
>TU1239696
CATACATAAGGACTATGTTTCTTCATGGGAAGTGTTCTATTAGTGAAATCCAATAGTAAACTGCCAGAGAATACTACTCACATGCGTCCTACTCCTTCATACATGCGGGTGTTGTCTGGTAGGGTTTTTATTTCTGCATGTGTCAGGTTGGCATGTTTCTTCATGCGAGTGAGCTGGTCGATCTGAAGATCTGCCAGTTTCGCCTTTTGTTGTGTGTCAATCATTTTCGATTGCAGCTCTGCAAAGGCCTTCTTCAGCTCTAAATCTATGGGGGCCGCCATGTTGAACACGAGAACGTAACAACGAACCACGCCCATAAAAGTATCTTACAGTTTCTGCCTTCTTCAGCCGGCCCAGAGACGTACTTTTACCATGCATCATTTTCTTTGACAGATGGATTTCTGAAAAACATTTGGTTTAATGATTATGGCTGGTATAATGTCATATTTTGCCAGCATCATCTAAGCTGTAATACGTTATGTTCCCTGTATGTGAGAGTACTATGGCCTCTGCCTTGAGGTCTATACCTTTATGGCACAGGTGGTAgtgaatcaaataaaatgttattggtcacatacacatatttagtggATGTAGCGAAATTATTATGTCCCTTGCTCCAactatgcagtaatatct

Function

symbol description
pfd1 Enables unfolded protein binding activity. Involved in cytoskeleton organization; positive regulation of transcription elongation from RNA polymerase II promoter; and protein folding. Part of prefoldin complex. Orthologous to human PFDN1 (prefoldin subunit 1).

NR:

description
prefoldin subunit 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1239694 False 1051 lncRNA 0.41 4 55726068 55743213
TU1239696 True 639 lncRNA 0.41 2 55741895 55743213

Neighbor

gene id symbol gene type direction distance location
prob1 LOC106567422 coding upstream 13646 55704341 ~ 55714760 (+)
LOC110537810 LOC106567475 coding upstream 57906 55666673 ~ 55668162 (+)
ttc1 LOC106567425 coding upstream 82728 55625361 ~ 55643340 (+)
adra1ba LOC106567426 coding upstream 109745 55600352 ~ 55616323 (+)
LOC110537802 LOC106603906 coding upstream 270732 55451594 ~ 55455336 (+)
LOC110537815 NA coding downstream 48900 55792113 ~ 55846902 (+)
LOC110537817 LOC106567419 coding downstream 137858 55881071 ~ 55889473 (+)
LOC100136702 LOC100136702 coding downstream 510713 56253926 ~ 56255161 (+)
LOC110537822 NA coding downstream 829212 56572425 ~ 56574595 (+)
ube2g1a ube2g1 coding downstream 851097 56594310 ~ 56604376 (+)
G1089818 NA non-coding upstream 48297 55677554 ~ 55677771 (+)
G1089817 ccnjl non-coding upstream 48669 55676964 ~ 55677399 (+)
G1089815 NA non-coding upstream 50441 55675389 ~ 55675627 (+)
G1089814 LOC106567423 non-coding upstream 51506 55673784 ~ 55674562 (+)
G1089890 NA non-coding downstream 38049 55781262 ~ 55781649 (+)
G1089892 NA non-coding downstream 40329 55783542 ~ 55783828 (+)
G1089893 NA non-coding downstream 41144 55784357 ~ 55784736 (+)
G1089896 NA non-coding downstream 44637 55787850 ~ 55788081 (+)
G1089921 NA non-coding downstream 112536 55855749 ~ 55856047 (+)
LOC110538908 LOC106603872 other upstream 1445347 54253719 ~ 54283905 (+)
G1087914 NA other upstream 1577106 54109690 ~ 54148962 (+)
G1086237 LOC106567502 other upstream 3068573 52649604 ~ 52657495 (+)
G1082266 NA other upstream 6045264 49679023 ~ 49680804 (+)
LOC110537713 LOC106567542 other upstream 6425721 49262142 ~ 49300347 (+)
G1091217 NA other downstream 982394 56725607 ~ 56726003 (+)
G1091235 NA other downstream 1009205 56752418 ~ 56752947 (+)
LOC110537831 dhx33 other downstream 1372612 57112902 ~ 57118165 (+)
LOC110537841 mtmr4 other downstream 2156258 57893341 ~ 58071571 (+)
LOC118937686 NA other downstream 2472942 58216142 ~ 58222215 (+)

Expression


Co-expression Network