G1093397


Basic Information

Item Value
gene id G1093397
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 58606818 ~ 58607396 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1243502
ATTCTaacaaaaaatataataatttatGCCAACATATCAGTCATTGCATTCCTATATTATTATATGCAGTattgttttattgtatttttttaaaattaatttacaGAACATTATTAAGTCTTATCTTGGCATGTAGGAACTTGTAAGTAATGGTCAAGTTTTTTGACCCAAATGTATACGTGGCCCATGTTTATTTTCATTCGGGAGGCACTTTGAGTCTCTTGGTGAGTATTGTTTCtctgtaagggaatacccccctgatttggacaaaaatgaatggcaaaatattggcattggacaaaccatatacacgatgtccaataccacccaatttggcgttgattcatgcaaagtatattgcaaatgccatatggcaattgccaattgtaacacttcaaaaatccaaaatgcgttccaccggggcttttcatattgcaaatgcaacccaagtcaacatccaaaagcaaaattttgaaaaaaggataaaaaaaaaaaaaactcttttgtcaattacacatgtgtaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1243502 True 525 lncRNA 0.33 2 58606818 58607396

Neighbor

gene id symbol gene type direction distance location
LOC110538918 nkx3-2 coding upstream 60221 58545146 ~ 58546597 (+)
LOC110539153 LOC106604490 coding upstream 76599 58528290 ~ 58530219 (+)
LOC110537848 sp30l coding upstream 320190 58274018 ~ 58286628 (+)
LOC110537846 ggnbp2 coding upstream 334032 58225787 ~ 58272786 (+)
LOC118937686 NA coding upstream 384603 58216142 ~ 58222215 (+)
LOC110538919 atp8a1 coding downstream 83721 58691117 ~ 58827450 (+)
LOC110538920 NA coding downstream 243340 58850736 ~ 58873451 (+)
LOC110537867 LOC106600640 coding downstream 268005 58875401 ~ 58917409 (+)
LOC110537868 LOC106600641 coding downstream 328134 58935530 ~ 58959234 (+)
LOC110537870 LOC100380866 coding downstream 354371 58961767 ~ 58975136 (+)
G1093326 NA non-coding upstream 101750 58504796 ~ 58505068 (+)
G1093252 NA non-coding upstream 147137 58425346 ~ 58459681 (+)
G1093248 NA non-coding upstream 185587 58415787 ~ 58421231 (+)
G1093243 NA non-coding upstream 191634 58402466 ~ 58415184 (+)
G1093244 NA non-coding upstream 195959 58403296 ~ 58410859 (+)
G1093401 NA non-coding downstream 7939 58615335 ~ 58615695 (+)
G1093404 NA non-coding downstream 15266 58622662 ~ 58622907 (+)
rab28 LOC106600633 non-coding downstream 16433 58575601 ~ 58625910 (+)
G1093349 NA non-coding downstream 19429 58626825 ~ 58627165 (+)
G1093411 NA non-coding downstream 25192 58632588 ~ 58632818 (+)
LOC110537841 mtmr4 other upstream 691986 57893341 ~ 58071571 (+)
LOC110537831 dhx33 other upstream 1488891 57112902 ~ 57118165 (+)
G1091235 NA other upstream 1853871 56752418 ~ 56752947 (+)
G1091217 NA other upstream 1880815 56725607 ~ 56726003 (+)
G1093909 NA other downstream 934162 59541558 ~ 59542603 (+)
G1094218 LOC100380853 other downstream 1423607 60031003 ~ 60034020 (+)
G1095244 LOC108238713 other downstream 1778268 60385664 ~ 60385973 (+)
LOC110539079 LOC106600700 other downstream 2089291 60696612 ~ 60777061 (+)
G1095209 NA other downstream 2209095 60816491 ~ 60818897 (+)

Expression


Co-expression Network