Gene
RNA
| Item | Value |
|---|---|
| gene id | G1093404 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048576.1 |
| NCBI id | CM023230.2 |
| chromosome length | 102853256 |
| location | 58622662 ~ 58622907 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1243511 | True | 246 | lncRNA | 0.44 | 1 | 58622662 | 58622907 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110538918 | nkx3-2 | coding | upstream | 76065 | 58545146 ~ 58546597 (+) |
| LOC110539153 | LOC106604490 | coding | upstream | 92443 | 58528290 ~ 58530219 (+) |
| LOC110537848 | sp30l | coding | upstream | 336034 | 58274018 ~ 58286628 (+) |
| LOC110537846 | ggnbp2 | coding | upstream | 349876 | 58225787 ~ 58272786 (+) |
| LOC118937686 | NA | coding | upstream | 400447 | 58216142 ~ 58222215 (+) |
| LOC110538919 | atp8a1 | coding | downstream | 68210 | 58691117 ~ 58827450 (+) |
| LOC110538920 | NA | coding | downstream | 227829 | 58850736 ~ 58873451 (+) |
| LOC110537867 | LOC106600640 | coding | downstream | 252494 | 58875401 ~ 58917409 (+) |
| LOC110537868 | LOC106600641 | coding | downstream | 312623 | 58935530 ~ 58959234 (+) |
| LOC110537870 | LOC100380866 | coding | downstream | 338860 | 58961767 ~ 58975136 (+) |
| G1093401 | NA | non-coding | upstream | 6967 | 58615335 ~ 58615695 (+) |
| G1093397 | NA | non-coding | upstream | 15266 | 58606818 ~ 58607396 (+) |
| G1093326 | NA | non-coding | upstream | 117594 | 58504796 ~ 58505068 (+) |
| G1093252 | NA | non-coding | upstream | 162981 | 58425346 ~ 58459681 (+) |
| G1093248 | NA | non-coding | upstream | 201431 | 58415787 ~ 58421231 (+) |
| rab28 | LOC106600633 | non-coding | downstream | 922 | 58575601 ~ 58625910 (+) |
| G1093349 | NA | non-coding | downstream | 3918 | 58626825 ~ 58627165 (+) |
| G1093411 | NA | non-coding | downstream | 9681 | 58632588 ~ 58632818 (+) |
| G1093415 | NA | non-coding | downstream | 14914 | 58637821 ~ 58638142 (+) |
| G1093425 | NA | non-coding | downstream | 29252 | 58652159 ~ 58652382 (+) |
| LOC110537841 | mtmr4 | other | upstream | 707830 | 57893341 ~ 58071571 (+) |
| LOC110537831 | dhx33 | other | upstream | 1504735 | 57112902 ~ 57118165 (+) |
| G1091235 | NA | other | upstream | 1869715 | 56752418 ~ 56752947 (+) |
| G1091217 | NA | other | upstream | 1896659 | 56725607 ~ 56726003 (+) |
| G1093909 | NA | other | downstream | 918651 | 59541558 ~ 59542603 (+) |
| G1094218 | LOC100380853 | other | downstream | 1408096 | 60031003 ~ 60034020 (+) |
| G1095244 | LOC108238713 | other | downstream | 1762757 | 60385664 ~ 60385973 (+) |
| LOC110539079 | LOC106600700 | other | downstream | 2073780 | 60696612 ~ 60777061 (+) |
| G1095209 | NA | other | downstream | 2193584 | 60816491 ~ 60818897 (+) |
