G1094218 (LOC100380853)


Basic Information

Item Value
gene id G1094218
gene name LOC100380853
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 60031003 ~ 60034020 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1244425
ctccactacacgcgccgagcatgtgtccctggagcgcaaggtgcttggtcgactgttggagcatgacctgtacgtcaaggctgagaaatgtctgttcttccaacagtccatcTCCATCTTAGGGTACCGCTTTTCCACGtcagggatggagatggagagtgacagCATTTCAGCCGTgcataattggccgactcccaccacggtaaaggaagtgcagcggtttctggggtttgccaactactaccggaggtttatccggggttttggtcaggtagcagctcccattacctcactgctgaagggaggaccgaTGAcgctgcagtggtcggctgaggtggacagggcttttggtcacctgaaggctctctTTACCTTGActcccatgtagctcatctggatccctctttggcgttcatcgTGGAGGTGGACGTGTCCGAGGGTGGGATAGGAGCCGTGTTCTCTCAGCGCTCGAAGcacgccaccaaagctccgcccctgtgctttcttttcgaagaagctcagcccggcggagcgaaactatgatgtgggggaccgggagctgttggctgttgtcaaggctctgaaggcgtggagacattggcttgagggggctaaacacccttttctcatctggactgaccatcgcaatctggagtacatctgggcggtgaggagactgaaccctcgccaggcaaggtgggcagaccaggttcccagaacgctaaggcagatgcattgtcccggatgtatgacacagaggagtggtccatggatcacactcccatacttcgagcctcttgcctggtggcaccggtggtgtgggagttggatgcggacatcgagcgggcgttacgcacagagcccactcccccccagtgtccagctgggcgccTGTACGTTCAGTCTGCTGTCCGCAAccgtttgatctattgggcccatacgtcaccctcctctggtcatcctggcatcggtcggacggtgcgtTGCCTTAGtgggaaatactggtggcccaccttggccaaTGACGTGaaggtttatgtttcctcctgctcagtgtgcgcccagtgcaaggctcccaggcacctgcccagagggaaattacaacccttacccgttccacaatggCAGTGGTCGCACCTTTCAGTAGACTTCCTGatggatcttcctccctcacagggcaacaccacgatcctggtcgttgtggatcgtttttctaagtcctgccgtctcctccctttgcccggtctccctacggccctacagactgcagaggccctgttCACTCACGTCTTCCGGCTCTGCGAGGTACCTGAGAACAGagtctctgatcggggtccccagttcacgtccagggtctggagcgcgttcatggaacgtctgggggtc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1244425 True 1386 TUCP 0.58 2 60031003 60034020

Neighbor

gene id symbol gene type direction distance location
parp14rs1 LOC106600688 coding upstream 21134 59980746 ~ 60009869 (+)
cramp1 cramp1 coding upstream 94526 59883053 ~ 59936477 (+)
nme3 nme3 coding upstream 270476 59755264 ~ 59760527 (+)
mrps34 mrps34 coding upstream 279769 59741166 ~ 59751234 (+)
LOC110537883 LOC106600674 coding upstream 305747 59710093 ~ 59726547 (+)
lin7b lin7b coding downstream 283212 60317232 ~ 60322740 (+)
ap2a1 LOC106600693 coding downstream 381023 60415043 ~ 60463695 (+)
si:ch211-195b15.8 LOC106600694 coding downstream 444425 60478445 ~ 60482021 (+)
LOC110537905 LOC106583918 coding downstream 448870 60482890 ~ 60500493 (+)
prrg2 prrg2 coding downstream 467682 60501702 ~ 60511300 (+)
G1094201 NA non-coding upstream 50924 59979767 ~ 59980079 (+)
G1094196 NA non-coding upstream 55318 59975427 ~ 59975685 (+)
G1094195 NA non-coding upstream 56245 59974505 ~ 59974758 (+)
G1094178 NA non-coding upstream 84932 59945829 ~ 59946071 (+)
G1094148 NA non-coding upstream 87674 59941127 ~ 59943329 (+)
G1095032 NA non-coding downstream 89389 60123409 ~ 60123653 (+)
G1095057 NA non-coding downstream 106434 60140454 ~ 60140666 (+)
G1095072 LOC100136012 non-coding downstream 116881 60150901 ~ 60151199 (+)
G1095073 NA non-coding downstream 117354 60151374 ~ 60151730 (+)
G1095077 NA non-coding downstream 119836 60153856 ~ 60154067 (+)
G1093909 NA other upstream 488400 59541558 ~ 59542603 (+)
LOC118937686 NA other upstream 1808813 58216142 ~ 58222215 (+)
LOC110537841 mtmr4 other upstream 2116171 57893341 ~ 58071571 (+)
LOC110537831 dhx33 other upstream 2913076 57112902 ~ 57118165 (+)
G1091235 NA other upstream 3278056 56752418 ~ 56752947 (+)
G1095244 LOC108238713 other downstream 351644 60385664 ~ 60385973 (+)
LOC110539079 LOC106600700 other downstream 662667 60696612 ~ 60777061 (+)
G1095209 NA other downstream 782471 60816491 ~ 60818897 (+)
mmp25a LOC106600705 other downstream 920680 60931123 ~ 60965921 (+)
G1095540 NA other downstream 1003719 61037739 ~ 61352345 (+)

Expression


Co-expression Network