G1096968


Basic Information

Item Value
gene id G1096968
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 63967184 ~ 63969690 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1247588
AAAACAAAATAGTACCCTTACGTGAAATACTAGGACAGCGAGAAAACCCAACAAAACACTAACCcctctcacaaatacagaagaacaagcccgcacaaacagaagcgggctaaacaaacttaaataaccccaccctaacaaccaaacaatgaacaggtgaaaccaattagacaaaaccaaacgaacacggaacaaaggatcggtggcagctagtagaccggcgaggacgaccgccgagcgccacccgaacaagaaggggagccaccttcggtaatattcgtgacagacattgcaatttgcagacagagtcgaaaagagaacacacagaatgttcacatcttcaaactaagggcatctgtgacagagagggagaagcgtccaataatgtatacgggtaagaaagtctagctagctacattttcagatattatacatttctaattttgtcagaaaatcgttttcatttcaagttaaagtgtactgttagctagctaggtaacattagctggctggctagctagtaaCGTTACGTGTATGGTCTGTGCTGTGTAGTAATGTTATTCATATTTCAGAgatagttatagcctaatgtcagggttggggagtaacagattacagttactgttttttgtaatcccttacatgtaatagATTACATATAATCCATATGTTAACTGGTAACTTTAATCCGTAAcgttaccagctaaaatattgtaatcagattacagatacttttgaaaaactagatgattacttcgaggattacttttaaattcgtagcctagtggttagagcgtttggccagtaaccgaaaggttgcttgatcggggatccttgagctgacaaggtaaaaatctgtcgttctgcccctgaacgagactgttaacccactgttcctaggctgtcattgtaaataagaatttgttcttaactgacttgcctagttaaataaaggttaaaaaagagAAAAGGATTAAGATATTTGCAAAGAGAAACACACCTCTGTTGATTCAATGAGAGAGATGATTATCCAAACACgatccgagtggcgcagcggtctaaggcactacatctcagtgctagaggtgtcattacagaccctggtttgattccgggCTGTATGTGAGACTATAGATgtggactttggagatcaggttGTTTTAATTAAGCAGAATTCACTCTCTGCATCCTGCATCTGGATCCaaaagaaaataaaacatttgtagagccaCATAcgttctgagaatcgtcgcctctttctctcATCGCGCATCAAAATGATTTTAGAATACAAAAATTAGTACAGCCTCTCCTTATTATGCATCAACACATAACATATATTTTACATAGATAAAACCGCAtacctgcatccaaaaggaaataaaacatttgtagagcacatttGTTCAGCGAATCGACGCCActttctacaacagatgcacaacacaagggactgggatcattcgaggagctcgccatcgttcacacatacaatagccTGCTAATACCTGAGCTAGCTATTAACCATATGTTGAATGCAGAATGTTAATATCATCCTAAAAAGTAGTTACAGGTGCATCTTAACAAAACCATCAACTTATGAGTAACATCTAAATATACAacattattcatgaacaaaacactGTGTGTATGACTTTGTGCTTAAAATAATCACGTTTTTCTGAAGACGACAGAAAAAACGTGTCTACCTCTGATAGcgcatcaaaatgatttgagcacGAGCACGCAGGGCAAAATGTAAGTACACACTtaacaaatcaacatgccatattaatatatgaacctggtgaaattcacacAGTACTTTAACAACTGTTACATTAGCAGCGTATGCAGGTCCTGCATGAGGGCAGAGACCCAAAGCACCCGCTGACCTAACTGCCCTAAAGAGGGTGCTGCTGCTCTGTCTGATGATATTCTCCTCAACAGAACCACATTCTGGTAGCCTACACAGTCAAACAAGTACTATGTTGTACAATGTTTTAGAAATTCATGAGTTTATTTTCTCTAGAATCCCTGGACATGAATCTAGTGAGGCCTAACCAGAAGTAAGAACCTGGAAGGTGAGGAATTCTAAGGCTCTTGTATGAGAAGTTAGCAAAGCAACATTTACTGTGTGAAATGCAATGTTATCACCATCATTCTATTTCAATTATCATCACACACCCATTTTGACTGCCAGAACGAATGAAAGCAATTCATGAAAGGACTAGATGGATAATAATGTACATGCAAGTCTGTATGAAGGCTGTATAGAAAGACCAGGGCATGGTGAATATTCCCTGTTGTCTCATAGTGAGATAACAGTACAGACTTGATGAAGGCTCTACTGGCTGTTGGATGCAGTTGGATGCTGAAGCTGGATACTGAATGTACTCTTGAACTCTCTCTCAAATAGATCCTTCAATCTTTCACCCATCCCACAGAACTCT

Function

NR:

description
PREDICTED: nuclear body protein SP140-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1247588 True 2453 lncRNA 0.40 3 63967184 63969690
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110538933 LOC106600901 coding upstream 58511 63888086 ~ 63908673 (+)
trnas-uga-37 NA coding upstream 88497 63878606 ~ 63878687 (+)
trnas-uga-36 NA coding upstream 89119 63877984 ~ 63878065 (+)
trnas-uga-35 NA coding upstream 89421 63877682 ~ 63877763 (+)
trnas-uga-34 NA coding upstream 90047 63877056 ~ 63877137 (+)
baiap2l2a LOC106600898 coding downstream 173165 64142855 ~ 64172178 (+)
LOC110538012 LOC106600897 coding downstream 262449 64232139 ~ 64242953 (+)
si:dkey-110g7.8 LOC106600891 coding downstream 400268 64369958 ~ 64376356 (+)
LOC110538020 LOC106600890 coding downstream 437683 64407373 ~ 64416073 (+)
LOC110538022 LOC106600886 coding downstream 460815 64430505 ~ 64438581 (+)
G1096952 NA non-coding upstream 33348 63930058 ~ 63933836 (+)
G1096949 NA non-coding upstream 46251 63913125 ~ 63920933 (+)
trnas-cga-3 NA non-coding upstream 122604 63843513 ~ 63844652 (+)
G1096924 NA non-coding upstream 123680 63838009 ~ 63843504 (+)
G1096974 NA non-coding downstream 36825 64006515 ~ 64006901 (+)
G1096992 NA non-coding downstream 54716 64024406 ~ 64024858 (+)
G1096994 NA non-coding downstream 58760 64028450 ~ 64028660 (+)
G1096999 NA non-coding downstream 62968 64032658 ~ 64076808 (+)
G1097000 NA non-coding downstream 67732 64037422 ~ 64055530 (+)
LOC100305204 hebp2 other upstream 632490 63302491 ~ 63334694 (+)
LOC118937701 LOC100136295 other upstream 1519710 62441706 ~ 62448515 (+)
G1095540 NA other upstream 2614839 61037739 ~ 61352345 (+)
mmp25a LOC106600705 other upstream 3001589 60931123 ~ 60965921 (+)
G1097063 NA other downstream 166668 64136358 ~ 64136704 (+)
G1097116 NA other downstream 258311 64228001 ~ 64228684 (+)
G1097122 NA other downstream 284922 64254612 ~ 64255064 (+)
G1100432 NA other downstream 1463450 65433140 ~ 65433457 (+)

Expression

G1096968 Expression in all Baseline Samples

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G1096968 Expression in each Bioproject

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G1096968 Expression in each Sample
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Co-expression Network