G1099377


Basic Information

Item Value
gene id G1099377
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 64636208 ~ 64652489 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1250298
CACAGCTTTTCCTTTATTGATCGTCTCCCGACAAAGTCCACCACATCTACATCAGGTCTTTCACAAACAAGCAACAAACAGGAAATAATTATGTACATTTATCCCTAATTAATTATCTGATTAATTTAATCAAAAATCATTACATCAAAAGCATTACAACTATTTTTTTTTCCAACTCTGTAGTAGCACACAAAGACCACATAGTTTTTACACAATGTCTATATAATTGGTAGTTTTGTCCTGTTATCCCAGTTTATCTTTATAATTGTTGGTCACACTTTATTTTTTATAGCCCCATATAGATGAACTACAGATGGTTCTAGTATCAACTAAGTAGCTGTTGATAAGCAAATGTCtgctaaggttacggttagggttaggattatggttaatgttagggttagtgaatagttagttgaaatgttgttGACAGTTACTGAACATCTAGTGACCATCTACAACCCATCTACCTCGGACAATCCAAAGAAAGTTTTACCTAAATGTTTCTTCCCAGAAAGGTTTGCAACAGTAAAACAGTAAAGACAAAGAAAATGTTTCCTGATTCAGAAAACAATGCCGTACCTCACAAAATGAAAGACGAAGATGTCAGTTattttgaaacacacacactttaaatgcATTAATACATATAGACATAAGCTATTTTAGGTACAATATATTATCTAAGTTTAATACATAGTAATATCTGGTTAAtaataatgtattaaaaatgttaTTTCACACATATATAATTACACATTTGTTATGTATACCACAAAATAAAAATGTCCTGTTTTTTCATAATATCTGTAGTATATGCattaccagtcaaatgtttggacacgcctactcattcaaagGTCCTCTCCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1250298 True 871 lncRNA 0.32 2 64636208 64652489
Loading

Neighbor

gene id symbol gene type direction distance location
c1qtnf6a c1qtnf6 coding upstream 98809 64522838 ~ 64537399 (+)
il2rb il2rb1 coding upstream 145547 64485078 ~ 64490661 (+)
LOC110539154 tex33 coding upstream 158083 64475712 ~ 64478125 (+)
LOC110538025 LOC105029658 coding upstream 160797 64470116 ~ 64475411 (+)
LOC110538023 LOC106600884 coding upstream 175091 64459297 ~ 64461117 (+)
crhr1 LOC106600876 coding downstream 298542 64951031 ~ 65117379 (+)
cdc27 LOC106600875 coding downstream 597965 65250454 ~ 65283926 (+)
kansl1b LOC106600871 coding downstream 635174 65287663 ~ 65369708 (+)
scn4ab LOC106600868 coding downstream 808041 65460530 ~ 65496809 (+)
gh1 gh1 coding downstream 864740 65517229 ~ 65521363 (+)
G1099365 NA non-coding upstream 21254 64614653 ~ 64614954 (+)
G1099326 LOC106600880 non-coding upstream 22973 64588979 ~ 64613235 (+)
G1099336 NA non-coding upstream 70020 64560649 ~ 64566188 (+)
G1099325 LOC106600973 non-coding upstream 87959 64544508 ~ 64548249 (+)
G1099280 LOC105030512 non-coding upstream 173448 64462394 ~ 64462760 (+)
G1099811 NA non-coding downstream 163557 64816046 ~ 64816343 (+)
G1099815 NA non-coding downstream 165938 64818427 ~ 64818773 (+)
G1099821 NA non-coding downstream 169471 64821960 ~ 64822195 (+)
G1099838 NA non-coding downstream 179642 64832131 ~ 64832460 (+)
G1099848 NA non-coding downstream 188704 64841193 ~ 64841465 (+)
si:dkey-110g7.8 LOC106600891 other upstream 259994 64369958 ~ 64376356 (+)
G1097122 NA other upstream 381144 64254612 ~ 64255064 (+)
G1097116 NA other upstream 407524 64228001 ~ 64228684 (+)
G1097063 NA other upstream 499504 64136358 ~ 64136704 (+)
LOC110538933 LOC106600901 other upstream 745651 63888086 ~ 63908673 (+)
G1100432 NA other downstream 780651 65433140 ~ 65433457 (+)
LOC110538063 abi1 other downstream 1496720 66148710 ~ 66168256 (+)
LOC110538072 psd3 other downstream 2009475 66661875 ~ 66670815 (+)
G1101805 NA other downstream 2072172 66724661 ~ 66822261 (+)
G1102021 NA other downstream 2406246 67058735 ~ 67059407 (+)

Expression

G1099377 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
End of interactive chart.

G1099377 Expression in each Bioproject

Bar chart with 13 bars.
G1099377 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 2000.
End of interactive chart.

Co-expression Network