G1102026 (LOC106600846)


Basic Information

Item Value
gene id G1102026
gene name LOC106600846
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 67064618 ~ 67071642 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1253146
CGTTTCAATAAAATCatatgtatattttatttataaaaCAAGTCTGCATTTATTTTACAAAATTATTCAAAATGTACAGCACCCTTTCAATGAAAGGGATTTTTGTCATTAAGTGTAGAAGGTGAAAATGAAATGAAAGTTTACATTTTCAGTCTTTGTAGAGGAGGGATCTCATGTGTAGTTTtagcaaagatggtggataaatgaagagAGTTCACTCAGGCCTTCTACCATCGAAAATAAATAGTCAGTTCCGGTCTACTTAACTGGGTGTGTCTCCCATAGCCACCAATGCAATAGCAGCTAGGTCTGGTCTACTTACAGTACTTCATTGACTTTCATTGAACCAGAAAAAAACAGCAATTGGGgtgtctcgcttcctcttccATTTCTGGTTTTGTGTTGGCTTCAGTGTCTGCCAATATCTTGCAAATACTAAAGCAACACTGGAGAAATGCATAGAACTTGTGTTGAAACCTTGCAGTCTATCTATGAAGCAGTCCTTGACTTTTACATTAGAAAGTGCAATTCAAAGAAAAACTGAAATGTTTGTCTAGTTTGAGATTACATTTTAAAGGGATAGAGATGtcaagtgtatatatatatatatatatatatacatactcaGGTtttaaaacaggttttagaaCAATTGATTTTAGAACAATTGATTTTTGAGGTGACATGTTTGTGAATGACACGTGACACAGTCTGCCGCTATGGAAACCAGTCAACCTCCAACAGTCGGTAACCATGTCCTCTAGGTCAGAAAGCTGTTATGCAAACGTCTGTTTCATACGTTACCTATTTGCTTTGTACAGATGACAAACTTAGCAACACCAGTAAAGTACACATTCTGTACTGTACAATGACTGTACAATGTAATATGCATGCCCTGAaactcctctctgttcctgtgaTCTGTTGAACATTTAAAACCGAAGATGACTAATAGCACCTCATTAAAGGTCGTCTGTTCATGTAAACATGGCCTAGGTatgaagcagacagacaggggagaatCAGGTGTCCCATTCTTCCACTGATTATAGAtggaagagacagagagtgtgataCCAAGATGCATACAAAGACTCCCAGTCAGTCCCCATTTATAGGGAATAAAGAACAAAGATCTCTGGCTGGATTGACACAGACGACATGTCCCAGTGGGATGCACTGCCCTCCATCTCTATGAGTGTTACTGAGTGTGATAGAGGGCACCGTATGAAATGGTGTGACCaatgagggagaggcagagaacgTCTTCTGTGTTTGAGTGTGCATGAATTAGTTTAATAGAGAAAGCCATGAATTTttggtgtgtatgcatgtgtgtgtgtgaactttgTTTCCCAGCTCAGAGGTTCTCGTTGCTAGGCTCGTGACCAGGGAACAGATCAGGGGTTTCTGCTAACGTGGCCCTGACCTTCTTCTTCTCTTTAAAACGTCCTGAGTGGGACACTTTGACATGGCGTCCCTTGGTGGTGGTCTTATCCACTATCCTCTCCAGACGTGCGTTCAACTGGCTGTCCTCTGTGGCGCCCTCTACTGGCCCGGGGGCTCCGCCGTGGGGTGTGGTATTGCTGCCGTACTCCGCTGGGATCTCGTACAGTACCTTGGGCTCCGACTTCTTCTTACGTAGGAAGGTGAGCTTCCACCAGCCAGGCGATGGGTCAGCCAtgaccacacacagagagaggagggagagcgggaTGTAAGAATGGAGGGCCTGCTAGCAAAGCCAAATTCATTGATTCAAATATCAGATCATTCCCACTCCAATATCCACTTCAGAATCCTCTTCCACGCTTATCCTTTTACTGCTGTCCTTCCCTTCGTCTTCTTCGTCCTCCCCTGTTcagtctattctctctc
>TU1253147
CGTTTCAATAAAATCatatgtatattttatttataaaaCAAGTCTGCATTTATTTTACAAAATTATTCAAAATGTACAGCACCCTTTCAATGAAAGGGATTTTTGTCATTAAGTGTAGAAGGTGAAAATGAAATGAAAGTTTACATTTTCAGTCTTTGTAGAGGAGGGATCTCATGTGTAGTTTtagcaaagatggtggataaatgaagagAGTTCACTCAGGCCTTCTACCATCGAAAATAAATAGTCAGTTCCGGTCTACTTAACTGGGTGTGTCTCCCATAGCCACCAATGCAATAGCAGCTAGGTCTGGTCTACTTACAGTACTTCATTGACTTTCATTGAACCAGAAAAAAACAGCAATTGGGgtgtctcgcttcctcttccATTTCTGGTTTTGTGTTGGCTTCAGTGTCTGCCAATATCTTGCAAATACTAAAGCAACACTGGAGAAATGCATAGAACTTGTGTTGAAACCTTGCAGTCTATCTATGAAGCAGTCCTTGACTTTTACATTAGAAAGTGCAATTCAAAGAAAAACTGAAATGTTTGTCTAGTTTGAGATTACATTTTAAAGGGATAGAGATGtcaagtgtatatatatatatatatatatatacatactcaGGTtttaaaacaggttttagaaCAATTGATTTTAGAACAATTGATTTTTGAGGTGACATGTTTGTGAATGACACGTGACACAGTCTGCCGCTATGGAAACCAGTCAACCTCCAACAGTCGGTAACCATGTCCTCTAGGTCAGAAAGCTGTTATGCAAACGTCTGTTTCATACGTTACCTATTTGCTTTGTACAGATGACAAACTTAGCAACACCAGTAAAGTACACATTCTGTACTGTACAATGACTGTACAATGTAATATGCATGCCCTGAaactcctctctgttcctgtgaTCTGTTGAACATTTAAAACCGAAGATGACTAATAGCACCTCATTAAAGGTCGTCTGTTCATGTAAACATGGCCTAGGTatgaagcagacagacaggggagaatCAGGTGTCCCATTCTTCCACTGATTATAGAtggaagagacagagagtgtgataCCAAGATGCATACAAAGACTCCCAGTCAGTCCCCATTTATAGGGAATAAAGAACAAAGATCTCTGGCTGGATTGACACAGACGACATGTCCCAGTGGGATGCACTGCCCTCCATCTCTATGAGTGTTACTGAGTGTGATAGAGGGCACCGTATGAAATGGTGTGACCaatgagggagaggcagagaacgTCTTCTGTGTTTGAGTGTGCATGAATTAGTTTAATAGAGAAAGCCATGAATTTttggtgtgtatgcatgtgtgtgtgtgaactttgTTTCCCAGCTCAGAGGTTCTCGTTGCTAGGCTCGTGACCAGGGAACAGATCAGGGGTTTCTGCTAACGTGGCCCTGACCTTCTTCTTCTCTTTAAAACGTCCTGAGTGGGACACTTTGACATGGCGTCCCTTGGTGGTGGTCTTATCCACTATCCTCTCCAGACGTGCGTTCAACTGGCTGTCCTCTGTGGCGCCCTCTACTGGCCCGGGGGCTCCGCCGTGGGGTGTGGTATTGCTGCCGTACTCCGCTGGGATCTCGTACAGTACCTTGGGCTCCGACTTCTTCTTACGTAGGAAGGTGAGCTTCCACCAGCCAGGCGATGGGTCAGCCAtgaccacacaCTGTGTATATGTAGAGATCTGGAGGCGAACTTCCTCCCAAAGCTTAATAGTTTATGGGAGAAACCCTGCTAGCAAAGCCAAATTCATTGATTCAAATATCAGATCATTCCCACTCCAATATCCACTTCAGAATCCTCTTCCACGCTTATCCTTTTACTGCTGTCCTTCCCTTCGTCTTCTTCGTCCTCCCCTGTTcagtctattctctctc

Function

NR:

description
proline-rich protein 15-like protein A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1253146 False 1878 lncRNA 0.43 2 67064618 67071642
TU1253147 True 1904 lncRNA 0.42 2 67064618 67071642

Neighbor

gene id symbol gene type direction distance location
LOC110538082 LOC106600849 coding upstream 37480 67008013 ~ 67027138 (+)
LOC110538077 LOC106600959 coding upstream 385953 66674135 ~ 66678665 (+)
LOC110538072 psd3 coding upstream 393803 66661875 ~ 66670815 (+)
LOC110538075 LOC106600854 coding upstream 410656 66644027 ~ 66653962 (+)
LOC110538073 LOC106600855 coding upstream 431104 66589702 ~ 66633514 (+)
LOC110538084 LOC106600841 coding downstream 77159 67148801 ~ 67164013 (+)
LOC118937895 NA coding downstream 209321 67280963 ~ 67292113 (+)
LOC110538094 NA coding downstream 409420 67481062 ~ 67491128 (+)
LOC110538945 LOC106607489 coding downstream 499582 67571224 ~ 67574023 (+)
LOC110538098 LOC106607492 coding downstream 565482 67637124 ~ 67643446 (+)
G1102024 NA non-coding upstream 1491 67062891 ~ 67063127 (+)
G1102022 NA non-coding upstream 2729 67061662 ~ 67061889 (+)
G1102021 NA non-coding upstream 5302 67058735 ~ 67059407 (+)
G1101998 NA non-coding upstream 48190 67016088 ~ 67016428 (+)
G1101984 NA non-coding upstream 63615 66993317 ~ 67001003 (+)
G1102043 NA non-coding downstream 21355 67092997 ~ 67093240 (+)
G1102044 NA non-coding downstream 23064 67094706 ~ 67094932 (+)
G1102074 NA non-coding downstream 66990 67138632 ~ 67142806 (+)
G1102098 NA non-coding downstream 119764 67191406 ~ 67191745 (+)
G1102101 NA non-coding downstream 125383 67197025 ~ 67197271 (+)
G1101805 NA other upstream 293227 66724661 ~ 66822261 (+)
LOC110538063 abi1 other upstream 896421 66148710 ~ 66168256 (+)
G1100432 NA other upstream 1631161 65433140 ~ 65433457 (+)
G1102115 NA other downstream 153710 67225352 ~ 67225799 (+)
LOC110538103 LOC106600823 other downstream 733707 67793428 ~ 67810071 (+)
G1103416 eif1b other downstream 916052 67987694 ~ 68048717 (+)
G1104149 LOC106600798 other downstream 1432399 68504041 ~ 68505295 (+)
G1104162 NA other downstream 1456639 68528281 ~ 68531861 (+)

Expression


Co-expression Network