G1103416 (eif1b)


Basic Information

Item Value
gene id G1103416
gene name eif1b
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 67987694 ~ 68048717 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1254663
AAATAATTGTACCTCAAAACAAGATGTAAATTTCAAATATTTATTGAATAAAATGTGGAATTGTATAAACAAGTCTCCCCCACTCACTTTTCAGTTGGTAGCCCAGCATCAATCCTAACATGGCTGACTTTTTCAAAGGAAGAAGCACAACCTTGTAGATGGGGCTGCGATGATCAGAACTTCAGCAACACTCTGCTGTAACATGGACGTATGCAGCCCCACAAAACATTGGAACTGCAGTTAAGTGCTTCTCCCCAAACTGAACCACCCTTATCTATTCTAACCAACCCCCCCAACCACAACAGGATTCCGCATGAGGTGGCGGTTGATCATTTTATTGAAACTTGTACAAAACAAAAAGAGTTACATGGAATTGTGCCCTTCACACAGCAAACTAAAAAAATGTAAGGAAAAAACTAAATCACCACTCATCCCACATCTGTCAAGCCGTTTGTCCATGTTTGCACTGGACTGCTCCCGTATGAGGGGGGAGTTAAACTGGTAGTAAAAAGTCTCAATTCAGAGGTAATCATTATCTTAAAGGGGGTGCGGTGATTGCAGCACGGGGGAGGGAAGTATCacaaccaggggagagagggctGCTGAGAGCTTCTAGAATCCGTGGACCTTGAGCTGCTCCTCTTTCGCCAGGCCAATCTGGAAGTGGGATGAGGGCAGAAGAGACAGTCACACAAAGGAACTTTGAACTCCAGTCACAGAACATTTACAGACAGGGGCTTTTCTATGAGAGCCATCTGTAGGGGCCATGTGCTAAAGCAGGGACAAGAGTCAAACCTACCTCAATCAGAAACGTGCAGATATTCTTGCGCTGGTCACCTTGCAGCTGAATCACTTCCCCATACTCTGGGTGCTCAATCACTGTCAGAAACGTGCAGATATTCTTGCGCTGGTCACCTTGCAGCTGAATCACTTCCCCATACTCTGGGTGCTCAATCACTGTCCCATTGCAGGCAAATTTCTGTTGACAAAGCAGAACTAGTCAAACAAGACATGGAACTTTTTAGTTTACCACCTAGTGTAAACTCTGCCATAACATACCTTCTTAAAGGCCTTGACTAGCTTCTTCTTATCATAGTCGATGGCTATGCCCTGGACCGTGGTCAGAGTCTTCCTGCCGTTACGCTGCTGGATTCTTATGTGGATGTAGTCGTCAGTCCCAGATGGGAGTCTGTCATTACCCTTAGTTGCATCTGCAAATGGGTCTGTGGGAAGAACACCGAAAGTTTGGAGGTTCTGGATAGCGGACATACGATAAGATTGACTTTGCTTTCGGATAATAACTGGCTAGCGATCGACGGGTCCGCCCAATTTCTGTTTTTCTTTGAATCTTCCTTTACACGGGGACGAAGCTTTAGTCGGCTGACCGGCTTTCACAAAATGGACATCGTTCA
>TU1254667
AAATAATTGTACCTCAAAACAAGATGTAAATTTCAAATATTTATTGAATAAAATGTGGAATTGTATAAACAAGTCTCCCCCACTCACTTTTCAGTTGGTAGCCCAGCATCAATCCTAACATGGCTGACTTTTTCAAAGGAAGAAGCACAACCTTGTAGATGGGGCTGCGATGATCAGAACTTCAGCAACACTCTGCTGTAACATGGACGTATGCAGCCCCACAAAACATTGGAACTGCAGTTAAGTGCTTCTCCCCAAACTGAACCACCCTTATCTATTCTAACCAACCCCCCCAACCACAACAGGATTCCGCATGAGGTGGCGGTTGATCATTTTATTGAAACTTGTACAAAACAAAAAGAGTTACATGGAATTGTGCCCTTCACACAGCAAACTAAAAAAATGTAAGGAAAAAACTAAATCACCACTCATCCCACATCTGTCAAGCCGTTTGTCCATGTTTGCACTGGACTGCTCCCGTATGAGGGGGGAGTTAAACTGGTAGTAAAAAGTCTCAATTCAGAGGTAATCATTATCTTAAAGGGGGTGCGGTGATTGCAGCACGGGGGAGGGAAGTATCacaaccaggggagagagggctGCTGAGAGCTTCTAGAATCCGTGGACCTTGAGCTGCTCCTCTTTCGCCAGGCCAATCTGGAAGTGGGATGAGGGCAGAAGAGACAGTCACACAAAGGAACTTTGAACTCCAGTCACAGAACATTTACAGACAGGGGCTTTTCTATGAGAGCCATCTGTAGGGGCCATGTGCTAAAGCAGGGACAAGAGTCAAACCTACCTCAATCAGAAACGTGCAGATATTCTTGCGCTGGTCACCTTGCAGCTGAATCACTTCCCCATACTCTGGGTGCTCAATCACTGTCCCATTGCAGGCAAATTTCTGTTGACAAAGCAGAACTAGTCAAACAAGACATGGAACTTTTTTAGTTTACCACCTAGTGTAAACCCTGCCATAACATACCTTCTTAAAGGCCTTGACTAGCTTCTTCTTATCATAGTCAATGGCTATGCCCTGGACCGTGGTCAGAGTCTTCCTGCCGTTACGCTGCTGGATTCTTATGTGGATGTAGTCGTCAGTCCCAGATGGGAGTCGGTCATTACCCTTAGTTGCATCAGCAAATGGGTCGAAAGTTTGGAGGTTCTGGATAGCGGACATACGATAAGATTTCCTTTCCTTTCGGATAATAACTGGTTAGCGATAGACTGGTCTGCTTAATTTATTTTTCTTTCCTTTGACTCTTCCGTTTCACTGGGACGACGTTTTAGTCAGCTGAAAGGCTCTCACAAAATGGAGATTGTTTAGCTTGCAAAGTAGAAAACAACCCTTTATA
>TU1254668
AAATAATTGTACCTCAAAACAAGATGTAAATTTCAAATATTTATTGAATAAAATGTGGAATTGTATAAACAAGTCTCCCCCACTCACTTTTCAGTTGGTAGCCCAGCATCAATCCTAACATGGCTGACTTTTTCAAAGGAAGAAGCACAACCTTGTAGATGGGGCTGCGATGATCAGAACTTCAGCAACACTCTGCTGTAACATGGACGTATGCAGCCCCACAAAACATTGGAACTGCAGTTAAGTGCTTCTCCCCAAACTGAACCACCCTTATCTATTCTAACCAACCCCCCCAACCACAACAGGATTCCGCATGAGGTGGCGGTTGATCATTTTATTGAAACTTGTACAAAACAAAAAGAGTTACATGGAATTGTGCCCTTCACACAGCAAACTAAAAAAATGTAAGGAAAAAACTAAATCACCACTCATCCCACATCTGTCAAGCCGTTTGTCCATGTTTGCACTGGACTGCTCCCGTATGAGGGGGGAGTTAAACTGGTAGTAAAAAGTCTCAATTCAGAGGTAATCATTATCTTAAAGGGGGTGCGGTGATTGCAGCACGGGGGAGGGAAGTATCacaaccaggggagagagggctGCTGAGAGCTTCTAGAATCCGTGGACCTTGAGCTGCTCCTCTTTCGCCAGGCCAATCTGGAAGTGGGATGAGGGCAGAAGAGACAGTCACACAAAGGAACTTTGAACTCCAGTCACAGAACATTTACAGACAGGGGCTTTTCTATGAGAGCCAAGAGTCAAACCTACCTCAATCAGAAACGTGCAGATATTCTTGCGCTGGTCACCTTGCAGCTGAATCACTTCCCCATACTCTGGGTGCTCAATCACTGTCCCATTGCAGGCAAATTTCTTCTTAAAGGCCTTGACTAGCTTCTTCTTATCATAGTCAATGGCTATGCCCTGGACCGTGGTCAGAGTCTTCCTGCCGTTACGCTGCTGGATTCTTATGTGGATGTAGTCGTCAGTCCCAGATGGGAGTCGGTCATTACCCTTAGTTGCATCAGCAAATGGCCGAAAGTTTGGAGGTTCTGGATAGCGGACATACGATAAGATTTCCTTTCCTTTCGGATAATAACTGGTTAGCGATAGACTGGTCTGCTTAATTTATTTTTCTTTCCTTTGACTCTTCCGTTTCACTGGGACGACGTTTTAGTCAGCTGAAAGGCTCTCACAAAATGGAGATTGTTTAGCTTGCAAAGTAGAAAACAACCCTTTATA
>TU1254670
AAATAATTGTACCTCAAAACAAGATGTAAATTTCAAATATTTATTGAATAAAATGTGGAATTGTATAAACAAGTCTCCCCCACTCACTTTTCAGTTGGTAGCCCAGCATCAATCCTAACATGGCTGACTTTTTCAAAGGAAGAAGCACAACCTTGTAGATGGGGCTGCGATGATCAGAACTTCAGCAACACTCTGCTGTAACATGGACGTATGCAGCCCCACAAAACATTGGAACTGCAGTTAAGTGCTTCTCCCCAAACTGAACCACCCTTATCTATTCTAACCAACCCCCCCAACCACAACAGGATTCCGCATGAGGTGGCGGTTGATCATTTTATTGAAACTTGTACAAAACAAAAAGAGTTACATGGAATTGTGCCCTTCACACAGCAAACTAAAAAAATGTAAGGAAAAAACTAAATCACCACTCATCCCACATCTGTCAAGCCGTTTGTCCATGTTTGCACTGGACTGCTCCCGTATGAGGGGGGAGTTAAACTGGTAGTAAAAAGTCTCAATTCAGAGGTAATCATTATCTTAAAGGGGGTGCGGTGATTGCAGCACGGGGGAGGGAAGTATCacaaccaggggagagagggctGCTGAGAGCTTCTAGAATCCGTGGACCTTGAGCTGCTCCTCTTTCGCCAGGCCAATCTGGAAGTGGGATGAGGGCAGAAGAGACAGTCACACAAAGGAACTTTGAACTCCAGTCACAGAACATTTACAGACAGGGGCTTTTCTATGAGAGCCATCTGTAGGGGCCATGTGCTAAAGCAGGGACAAGAGTCAAACCTACCTCAATCAGAAACGTGCAGATATTCTTGCGCTGGTCACCTTGCAGCTGAATCACTTCCCCATACTCTGGGTGCTCAATCACTGTCCCATTGCAGGCAAATTTCTTAAAGGCCTTGACTAGCTTCTTCTTATCATAGTCAATGGCTATGCCCTGGACCGTGGTCAGAGTCTTCCTGCCGTTACGCTGCTGGATTCTTATGTGGATGTAGTCGTCAGTCCCAGATGGGAGTCGGTCATTACCCTTAGTTGCATCAGCAAATGGGTCTAGGGTTTGTTT
>TU1254671
AAATAATTGTACCTCAAAACAAGATGTAAATTTCAAATATTTATTGAATAAAATGTGGAATTGTATAAACAAGTCTCCCCCACTCACTTTTCAGTTGGTAGCCCAGCATCAATCCTAACATGGCTGACTTTTTCAAAGGAAGAAGCACAACCTTGTAGATGGGGCTGCGATGATCAGAACTTCAGCAACACTCTGCTGTAACATGGACGTATGCAGCCCCACAAAACATTGGAACTGCAGTTAAGTGCTTCTCCCCAAACTGAACCACCCTTATCTATTCTAACCAACCCCCCCAACCACAACAGGATTCCGCATGAGGTGGCGGTTGATCATTTTATTGAAACTTGTACAAAACAAAAAGAGTTACATGGAATTGTGCCCTTCACACAGCAAACTAAAAAAATGTAAGGAAAAAACTAAATCACCACTCATCCCACATCTGTCAAGCCGTTTGTCCATGTTTGCACTGGACTGCTCCCGTATGAGGGGGGAGTTAAACTGGTAGTAAAAAGTCTCAATTCAGAGGTAATCATTATCTTAAAGGGGGTGCGGTGATTGCAGCACGGGGGAGGGAAGTATCacaaccaggggagagagggctGCTGAGAGCTTCTAGAATCCGTGGACCTTGAGCTGCTCCTCTTTCGCCAGGCCAATCTGGAAGTGGGATGAGGGCAGAAGAGACAGTCACACAAAGGAACTTTGAACTCCAGTCACAGAACATTTACAGACAGGGGCTTTTCTATGAGAGCCAAGAGTCAAACCTACCTCAATCAGAAACGTGCAGATATTCTTGCGCTGGTCACCTTGCAGCTGAATCACTTCCCCATACTCTGGGTGCTCAATCACTGTCCCATTGCAGCTGAATCACTTCCCCATACTCTGGGTGCTCAATCACTGTCCCATTGCAGGCAAATTTCTGTTGACAAAGCAGAACTAGTCAAACAAGACATGGAACTTTTTAGTTTACCACCTAGTGTAAACTCTGCCATAACATACCTTCTTAAAGGCCTTGACTAGCTTCTTCTTATCATAGTCGATGGCTATGCCCTGGACCGTGGTCAGAGTCTTCCTGCCGTTACGCTGCTGGATTCTTATGTGGATGTAGTCGTCAGTCCCAGATGGGAGTCTGTCATTACCCTTAGTTGCATCTGCAAATGGGTCTGTGGGAAGAACACCGAAAGTTTGGAGGTTCTGGATAGCGGACATACGATAAGATTGACTTTGCTTTCGGATAATAACTGGCTAGCGATCGACGGGTCCGCCCAATTTCTGTTTTTCTTTGAATCTTCCTTTACACGGGGACGAAGCTTTAGTCGGCTGACCGGCTTTCACAAAATGGACATCGTTCA

Function

symbol description
eif1b Predicted to enable ribosomal small subunit binding activity and translation initiation factor activity. Predicted to act upstream of or within translational initiation. Predicted to be part of eukaryotic 43S preinitiation complex. Orthologous to several human genes including EIF1B (eukaryotic translation initiation factor 1B).

NR:

description
eukaryotic translation initiation factor 1B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1254663 False 1412 TUCP 0.46 3 67987694 68008477
TU1254667 False 1352 lncRNA 0.44 2 67987694 67990015
TU1254668 False 1239 lncRNA 0.44 4 67987694 67990015
TU1254670 False 1075 lncRNA 0.46 3 67987694 68048717
TU1254671 True 1352 lncRNA 0.45 4 67987694 68008477

Neighbor

gene id symbol gene type direction distance location
LOC110538105 LOC106600822 coding upstream 131672 67824802 ~ 67856022 (+)
LOC110538103 LOC106600823 coding upstream 177623 67793428 ~ 67810071 (+)
LOC110538104 LOC106600824 coding upstream 194605 67785697 ~ 67793089 (+)
LOC110538101 LOC106600827 coding upstream 229896 67752698 ~ 67757798 (+)
LOC110538100 LOC106600828 coding upstream 238976 67688984 ~ 67748718 (+)
LOC110538110 LOC106600816 coding downstream 1588 68050305 ~ 68052859 (+)
LOC110538112 NA coding downstream 8908 68057625 ~ 68062260 (+)
LOC110538113 LOC106600815 coding downstream 17275 68065992 ~ 68070573 (+)
LOC110538111 LOC106600814 coding downstream 28873 68077590 ~ 68080169 (+)
prf1.3 LOC106600810 coding downstream 93820 68142537 ~ 68146797 (+)
G1103415 NA non-coding upstream 44440 67943052 ~ 67943254 (+)
G1103378 NA non-coding upstream 109698 67873781 ~ 67877996 (+)
G1103334 NA non-coding upstream 213135 67774351 ~ 67774559 (+)
G1103333 NA non-coding upstream 213837 67773499 ~ 67773857 (+)
G1103331 NA non-coding upstream 215919 67771566 ~ 67771775 (+)
G1103752 NA non-coding downstream 98491 68147208 ~ 68147412 (+)
G1103762 NA non-coding downstream 155331 68204048 ~ 68210597 (+)
G1103800 NA non-coding downstream 162992 68211709 ~ 68212001 (+)
G1103819 LOC106600808 non-coding downstream 171439 68220156 ~ 68222116 (+)
G1103801 NA non-coding downstream 188119 68236836 ~ 68266542 (+)
G1102115 NA other upstream 761895 67225352 ~ 67225799 (+)
G1102021 NA other upstream 928287 67058735 ~ 67059407 (+)
G1101805 NA other upstream 1216303 66724661 ~ 66822261 (+)
LOC110538072 psd3 other upstream 1324237 66661875 ~ 66670815 (+)
G1104149 LOC106600798 other downstream 455324 68504041 ~ 68505295 (+)
G1104162 NA other downstream 479564 68528281 ~ 68531861 (+)
LOC110538155 LOC106600992 other downstream 1267015 69315451 ~ 69321518 (+)
LOC110538173 LOC106607273 other downstream 1774498 69823215 ~ 69875030 (+)
G1105194 NA other downstream 1973991 70022708 ~ 70048987 (+)
LOC110538947 LOC106600778 coding downstream 22208 68030685 ~ 68033321 (+)
LOC110538109 LOC106600778 coding downstream 24960 68033437 ~ 68037843 (+)

Expression


Co-expression Network