G1104142


Basic Information

Item Value
gene id G1104142
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 68495124 ~ 68496716 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1255470
tgtttaaatgtatttattttcatcGCACTTACATTCTCTGCAGTAAGACATTTAATTTACAAAAGTTGTATGTACATTTAGAAAATAGTGCACTGTCTCCATGACACACAtactcacaaatacacacagacacatgaacGACTTCCAGATACATCATATTTTTGCGGAAACTGTATAGACATCGTAATTGGCACATCCGAGAACAAGCTTTGTCGAGAGCTTTCTTTTGCATAATTTTCCTAATTCTTCAAAAAGACCAATCGAAACAGGCACGTTTGCAGATGCAGACAGCTTCAGCAGGGAAGGTATTAATAACaaaaaatgtaggcctacttcGCTCCAGGCCAGActaatagactgtagagtagGTCTATCAGCTCCAGACAAGACTCAAACAAAATATCCCTTTACTGTATAAACCCCTGAACTAGGGATCCAGCTCCTTCAGCCATTCATTCACACAGCTCTCCTCATGAAAACACATTCAATCCTAAAGTATAAAATACTCAAATAAAATTGCTCTCGCTGAGAATGTGTCTATGATTCCCCCCACTCAAAAGTGATTCACATGTAGTGAAACGCAATACACAGTTCAGTGCAATTAGCAAGGGATGAATCACTTTCAAATACTACGCTGAGAATGTGTCTATGATTCCCCCCACTCAAAAGTGATTCACATGTAGTGAAACGCAATACACAGTTCAGTGCAATTAGCAAGGGATGAATCACTTTCAAATACTACGCTGAGAATGTGTCTATGATTCCCCCCACTCAAACGAATCACATGTAGTGAAACGCAATACATAATTCAGTGCAATTAGCAAGGGATGAATCACTTTCAAATACTACGGTGATTATGAGAGCGCAGACACTACAATGCAGAATAACCCATCATCAATAAAATCTATCAGTAATCTCTTCAATAAGACATAGACATACAGGTAATTTAACTAACtgtaaccgatcgctgcagctgtgcatagtccatctgtaaatagcccacccaatctacctacctcatccccatactgtttttaatgtatttttctgttcttttgcacaccagtatctctacttgcacatcatcatctgttcATTTATCACCttagtgttaatctgctaaattgtaattattcactcctagggcctatttattgcctacctccttttgcacacacttcatatagactttcttttttttctactgtgtcattgacttgtttattgtgttattggcttgtttattgtttattccatgtgtaactctgtgtcgttgtctgtgtcacactgctttgctttatcttggccaggtcgcagttgtaaatgagaacgtgttctcaactagcctacctggttaaataaaggtgaaataaaaaataaaaaataaataaaaaggacccgcatactgtagagagaaaaaacatgaaaaGCTTGTCCCTGAACAATGGCCACACCTACTGGCTATGACAAGCT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1255470 True 1473 lncRNA 0.38 2 68495124 68496716

Neighbor

gene id symbol gene type direction distance location
LOC110538949 LOC106600800 coding upstream 57532 68398669 ~ 68437592 (+)
LOC110538126 LOC106600801 coding upstream 100557 68377001 ~ 68394567 (+)
LOC118937938 NA coding upstream 122697 68372284 ~ 68372427 (+)
LOC118937940 NA coding upstream 123330 68371651 ~ 68371794 (+)
LOC118937937 NA coding upstream 124214 68370767 ~ 68370910 (+)
trnaa-ugc-55 NA coding downstream 25716 68522432 ~ 68522508 (+)
LOC110538131 LOC106600796 coding downstream 62184 68558900 ~ 68594615 (+)
trnac-gca-3 NA coding downstream 274385 68771101 ~ 68771172 (+)
LOC110538134 LOC106600795 coding downstream 291644 68788360 ~ 68795371 (+)
LOC110538140 LOC106600790 coding downstream 417581 68914297 ~ 68916390 (+)
G1103912 LOC106607511 non-coding upstream 39952 68453342 ~ 68455172 (+)
G1103801 NA non-coding upstream 228582 68236836 ~ 68266542 (+)
G1103819 LOC106600808 non-coding upstream 273008 68220156 ~ 68222116 (+)
G1103800 NA non-coding upstream 283123 68211709 ~ 68212001 (+)
G1103762 NA non-coding upstream 284527 68204048 ~ 68210597 (+)
G1104176 LOC106586404 non-coding downstream 53218 68549934 ~ 68550220 (+)
G1104180 NA non-coding downstream 60150 68556866 ~ 68557199 (+)
G1104191 NA non-coding downstream 80631 68577347 ~ 68578669 (+)
G1104340 NA non-coding downstream 150632 68647348 ~ 68647635 (+)
G1104343 NA non-coding downstream 152453 68649169 ~ 68649380 (+)
G1103416 eif1b other upstream 486647 67987694 ~ 68048717 (+)
LOC110538103 LOC106600823 other upstream 685061 67793428 ~ 67810071 (+)
G1102115 NA other upstream 1269325 67225352 ~ 67225799 (+)
G1102021 NA other upstream 1435717 67058735 ~ 67059407 (+)
G1101805 NA other upstream 1723733 66724661 ~ 66822261 (+)
G1104149 LOC106600798 other downstream 7325 68504041 ~ 68505295 (+)
G1104162 NA other downstream 31565 68528281 ~ 68531861 (+)
LOC110538155 LOC106600992 other downstream 819016 69315451 ~ 69321518 (+)
LOC110538173 LOC106607273 other downstream 1326499 69823215 ~ 69875030 (+)
G1105194 NA other downstream 1525992 70022708 ~ 70048987 (+)

Expression


Co-expression Network