G1104191


Basic Information

Item Value
gene id G1104191
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 68577347 ~ 68578669 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1255534
GTCAAGATGGAATTCACAGTGGTAGCAAACAGATTCTCAGGGCAACAGAGAATAGACTAATGGGGCTATAGTGCATACAAGTTTGACAGCTTTTCTATACTAGTTTAAGCATTATAGTCAATCTATCATGTTATTGTTCGCCAAGATATCTagaaacagaaagaaaaaaaatagcCAAGTATCAAGGAAATTAAGTTTTATTTGATCCATTAGACAAACAATTTGTAAAACCCTAAAGTAGACAGAAATAAATATACAGGATGTGCATTTTGAAAACAgaacacttaaaaaaaatgtaattactcAAATTTGAAGGGGGGGAAAAAACAGGATAACGAAGACATGGTATCTTGCTGTGACACTTTCATAGATGTAATAAGCATAACCGATATCTCAATTCAAGTCTTTTTCATTGTAAAATATCTTCTTGAAGACAATGGTAGTTGTATTGAGGGAGCTTGGTGTCTTGATGTTGATTACGAGCCTGCTTGGGATGCTCTTCATCAAAAGTTTTTGTAATGCAACAACTGAAGAGAGGGGCATGGCCCTTGTTGTTGGCCATGGAGAAGAAGCCGCTGTTTGGGGAGAAGTCCAGGCGCTGGGCTCTGTATATGGTTTTCCTCTGGAACATGGGGAAGTTGGAGAACACTGTGAAGCTGGGGATATGAACCTGAaatgagaagggtagacacatgACACTTGATGACAGTGAAAGAGTGACATGGTTTTACTTCATTTTAAATCAATTCAAACTTTATTACTACCCAAGTCATGCTGCGATAAAACCTCTTATTTTACAAGAGACCAGGTGTAGCTGTAATGATGACAAAGACAACattaggtgtgtgtgagagagagagagactgaccaaTCGGGCAGCCTCGTCGTCAGCCCTGGAGGCGATGGCCAGGATCTCGGAGGTGGGGTTGAAGCGGAGAGAGGTGGCGGAGGTCACCAGGTTTGagactctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacctctggagagagtttgctgcactaaaagtaaagcggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatcc

Function

NR:

description
uncharacterized protein LOC110538132 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1255534 True 1185 lncRNA 0.40 2 68577347 68578669

Neighbor

gene id symbol gene type direction distance location
trnaa-ugc-55 NA coding upstream 54839 68522432 ~ 68522508 (+)
LOC110538949 LOC106600800 coding upstream 139755 68398669 ~ 68437592 (+)
LOC110538126 LOC106600801 coding upstream 182780 68377001 ~ 68394567 (+)
LOC118937938 NA coding upstream 204920 68372284 ~ 68372427 (+)
LOC118937940 NA coding upstream 205553 68371651 ~ 68371794 (+)
trnac-gca-3 NA coding downstream 192432 68771101 ~ 68771172 (+)
LOC110538134 LOC106600795 coding downstream 209691 68788360 ~ 68795371 (+)
LOC110538140 LOC106600790 coding downstream 335628 68914297 ~ 68916390 (+)
trnac-gca-5 NA coding downstream 522341 69101010 ~ 69101081 (+)
trnac-gca-6 NA coding downstream 530403 69109072 ~ 69109143 (+)
G1104180 NA non-coding upstream 20148 68556866 ~ 68557199 (+)
G1104176 LOC106586404 non-coding upstream 27127 68549934 ~ 68550220 (+)
G1104142 NA non-coding upstream 80631 68495124 ~ 68496716 (+)
G1103912 LOC106607511 non-coding upstream 122175 68453342 ~ 68455172 (+)
G1103801 NA non-coding upstream 310805 68236836 ~ 68266542 (+)
G1104340 NA non-coding downstream 68679 68647348 ~ 68647635 (+)
G1104343 NA non-coding downstream 70500 68649169 ~ 68649380 (+)
G1104362 NA non-coding downstream 85064 68663733 ~ 68664064 (+)
G1104366 NA non-coding downstream 89393 68668062 ~ 68668392 (+)
G1104399 NA non-coding downstream 114813 68693482 ~ 68693791 (+)
G1104162 NA other upstream 45486 68528281 ~ 68531861 (+)
G1104149 LOC106600798 other upstream 72052 68504041 ~ 68505295 (+)
G1103416 eif1b other upstream 568870 67987694 ~ 68048717 (+)
LOC110538103 LOC106600823 other upstream 767284 67793428 ~ 67810071 (+)
G1102115 NA other upstream 1351548 67225352 ~ 67225799 (+)
LOC110538155 LOC106600992 other downstream 737063 69315451 ~ 69321518 (+)
LOC110538173 LOC106607273 other downstream 1244546 69823215 ~ 69875030 (+)
G1105194 NA other downstream 1444039 70022708 ~ 70048987 (+)
G1105281 NA other downstream 1584020 70162689 ~ 70194672 (+)
G1105357 NA other downstream 1746289 70324958 ~ 70327126 (+)

Expression


Co-expression Network