G1104732 (phb)


Basic Information

Item Value
gene id G1104732
gene name phb
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 69310503 ~ 69314364 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1256149
GAAATAGGACAATTTTATTGTTAAGTTGAGACATATTGAGTGGAATGCGGGGACTTGCATATCCTCCCTCCAAAATAAGACACAGCGACAAACTTTAAAGAATCAGGGAAGGTTGCGACACTTGACCATCTTCCAGGCACGTTTCATACCACTGGGCTAGAAGGGACATGTCACTGAGGACCATGGATGAGGTGGTGTGGACAGCATGCTAGTAAACCAAAGATGATTCTGTAGAGGATCCAATCAAGTAGAGGGGAGTGCAGCACTGGGACTCCATGGCAATCAAACTGGGAGGATTTTAGGAAAGCTAGCTGTGAGAGGACATTTGACAGGCCATCGACACAATAGACTAAGTCAAAGGGATGGTAGATTCAGAGTAATATTTATAATATACGGCTCTGGGTAGATTAGTTCAGATCATTTGTACGATGTAATTTAAAGTTATGAGTGGAAAAACAAGGGTGCTTTGGATCCTACACTACTTTGGTGTATAGCAGCATCTTATTCACCCATGGAAGTTTGTGCTTGGCTAAGATGAATGTAAATCCAGTTGATTAAATTGCTTGTCCTCTCAGAGCAATAAATCCCCAGTATTGTGATTGCTGTGGTGGTTATAATAGTGCTAAAATGTTCCATCCTTCTCATGACATTCCAAACAGCTCTTCCCCTAAATTAACACAATTACAACTTCTTCATATCACAGGACTCTGTCACTGCGCTGAATTTGCCAGACAATGCCAAGGTAAATACAAAATCAGTGATGCAGTAAATTGACTTACTATATGTAGTTTACCATAGATCAATCCTAAGGCTCCCTCTTCCCCACACACTGCCCAGACTTCAGAACCTTATCATGGACCTTTCCACACTCTCAATCCGCCATTATTTCACCAGTCCATAGTTAGTCGGAGGAGAGTGTGTGAAGGTGGACACCcgttccctcaccccctccatggCCCATGCATTGGCTGGTCACAGGGAGGGgcggttaggtcagggtgtgtggGTCTCACTGGGGCAGCTGGAGGAGTGTGCCCTGGCCGGCAGGCAGGTAGGTGATGTTGCGGGAGCGGGACAGCTGGAAGGCGATGTCCTCGGCAGCCTCCAGCTTACGCAGCTCTACCAGGCCATCTCCAGCCTCCTGCAGGGAGTTAGCAATGAGCAGGGCGGCCTGAGAGTCACCCTCCGCTGAGATGATGGCTGCCTGTTTCTGTTGCTCGGCCTTCTCCACGACAAACCTGGCCCTCTCGGCCTCCTGCTGAGCCACCTGCTTCATCTCAACAGCCTCTGTGAACTCCTTACCGAACGTCAAGTGTGTCAGTGAGACGTCATCCAGGATGAGGCCGAAGGTGTTGGCTCTTTCTGTCAGGTCGTCACTGACCTGCCGAGACACCAgctctctctgggtgatgagcTCACCGGCATCAAACCGGGCCACCACGGACTTGAGGACCTCTGTGGTGATGGACGGCAGTACCCTCTCGTCGTAGTCCTCGCCGATGCTGGTGAAGATGCGTGGGAGCTGGCTAGTCACTGGCCGGAAGAGGATGCGCAGTGTGATGTTTACATTCTgcagatCTTTGCTGCCTGTGATGACAGGCACGTTGCGTGGACGAGAACGACAGTCAAAGATGATAGGCTTCTGTACCCAGGGAATGAGGAAGTGGGTTCCCTCGCCAACTACGGCGTCTTGCACTCCCCGGAACCTGTCAAATATAACTGCCCGATGACCTGCGTCAACATTGAAGAGGGCGGAGTTCACAACACCTCCACCAACGGCGAGGGCCAGCCCCAACTTCCCGATGGATTCAAATAGTTTCGCCATGTCTGCGGCCCTACTGTTTTGTCAGTTCTGTCTATGACCTCCAACAGAGCCAACGTTAGAACGCATGAATTATTTTTCTACAAAGCATGCGCGTCAACTTGTAACAAACTCCTCTCTGATTGGATAAGTAGTGCTCCGGGAACTTGTTTATCGATTAAATTCATTGGCTAGTGAGAATATCGCTGAGCATTCTGGTTGCTGAAGTCCACCAACTATGATAATAGTAATTTTACgatttaattaagcaataaggcacaagggggtgtggtatatggccaatataccacggctattggatgttcttaaacACGACCCAACGCGTAGTGCCTGAATACAGTCCTTAgccgtgttatattggccatataccacaaccccagaggtgccttattgctattataaactggttaccaacgtaattagagcagtaaaaatacatgttttgtcatactcgTGGTatactgtcagccaatcagcattc

Function

symbol description
phb Predicted to be involved in mitochondrion organization. Predicted to be located in mitochondrial inner membrane and plasma membrane. Predicted to be active in mitochondrion. Is expressed in several structures, including alar plate midbrain region; digestive system; immature eye; midbrain; and musculature system. Human ortholog(s) of this gene implicated in breast cancer and sporadic breast cancer. Orthologous to human PHB (prohibitin).

NR:

description
PREDICTED: prohibitin isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1256149 True 2303 lncRNA 0.49 7 69310503 69314364

Neighbor

gene id symbol gene type direction distance location
LOC110538150 LOC106600987 coding upstream 81303 69197666 ~ 69229200 (+)
LOC110538148 NA coding upstream 134534 69171519 ~ 69175969 (+)
LOC110538147 LOC107084780 coding upstream 141615 69166428 ~ 69168888 (+)
trnac-gca-6 NA coding upstream 201360 69109072 ~ 69109143 (+)
trnac-gca-5 NA coding upstream 209422 69101010 ~ 69101081 (+)
LOC110538155 LOC106600992 coding downstream 1087 69315451 ~ 69321518 (+)
LOC110538157 LOC106600994 coding downstream 88629 69402993 ~ 69435277 (+)
LOC110538162 LOC106600999 coding downstream 296435 69610799 ~ 69612255 (+)
LOC110486238 LOC106607270 coding downstream 415893 69730257 ~ 69735305 (+)
LOC110538170 LOC106601006 coding downstream 485310 69799674 ~ 69819817 (+)
G1104770 NA non-coding upstream 12934 69297239 ~ 69297569 (+)
G1104768 NA non-coding upstream 20271 69288974 ~ 69290232 (+)
G1104767 NA non-coding upstream 23619 69286539 ~ 69286884 (+)
G1104757 NA non-coding upstream 52457 69257809 ~ 69258046 (+)
G1104756 NA non-coding upstream 52742 69257507 ~ 69257761 (+)
G1104775 NA non-coding downstream 395 69314759 ~ 69315064 (+)
G1104776 NA non-coding downstream 729 69315093 ~ 69315293 (+)
G1104733 LOC106600993 non-coding downstream 7298 69321662 ~ 69334729 (+)
G1104781 NA non-coding downstream 37677 69352041 ~ 69437721 (+)
G1104821 NA non-coding downstream 90774 69405138 ~ 69405394 (+)
G1104162 NA other upstream 778642 68528281 ~ 68531861 (+)
G1104149 LOC106600798 other upstream 805208 68504041 ~ 68505295 (+)
G1103416 eif1b other upstream 1302026 67987694 ~ 68048717 (+)
LOC110538103 LOC106600823 other upstream 1500440 67793428 ~ 67810071 (+)
G1102115 NA other upstream 2084704 67225352 ~ 67225799 (+)
LOC110538173 LOC106607273 other downstream 508851 69823215 ~ 69875030 (+)
G1105194 NA other downstream 708344 70022708 ~ 70048987 (+)
G1105281 NA other downstream 848325 70162689 ~ 70194672 (+)
G1105357 NA other downstream 1010594 70324958 ~ 70327126 (+)

Expression


Co-expression Network