G1104733 (LOC106600993)


Basic Information

Item Value
gene id G1104733
gene name LOC106600993
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 69321662 ~ 69334729 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1256152
ttctttccgtTATGCTTTTTTATTAGTCGTGGAAAACATGTAAGGCATATGGTAACATTACACATTGAAGCGTTACAAGCTCTAGAGTCCATACTGTGGACAGCATGGCACCCACGTACGCAGTGAAACCCAGACAAGCACAGAAGCAGCATCAATTCAAaagggtttaaaaaaaacaaagtgGAGACAACTTAGTAGACGAGTGGAAAACGACACtgtggacagaaggagagacggAATGACAAAATCAACGTGTAGGTCGAATAGCTGTCTCACAGTAAACCGTGTGTGGAATCTGAGCTGTCTGGACGGGAAAGTGACAATGGACCTGTTTTTCATGAAACTTTCCCGTAGACGGGTTCAATGTGCATCTTGTTATGAGGCTGACTTGACAGTGCCAgatgagggaagaggagggggtatGTGTGCAGTGAGGAGAGGCGAGGGGGGGCAGGAGCGGGTATAGGTGCAGTGATTTGGCTGCTGTTGGCaccatgatgatgatgagggtggaaagggaaagggactCCCTCTGCACAGAGACACTACTGAACAATACAGTGGAAGGAATAGTGAACTATACACACATGCCTTTTTTTCCGGGTCACCTACACACAGATCCTAGTGTACTATACACATCGTAACAAGCCAAATGCACCAGACACTCACAGCATTTCTATAGAGTTGTGGAATGTGTTGGTAGTTGGCACATGGCAACAATTTTTAGTGATTGCTAATGAAGAGCCAGAGACAGCCAGAAGCGGTTGGGTTGTTTTCTTTTAGGGGAGGGGTGGACGGGTGGGGGCTGTACGCCTCTGGATGTGGTAATAATCTCCAGACTGGGATTATCTTTCTAACTAGGAATACACTCCACCCAGCACTGCGATTGACATAAGACTGGGAAAGAGAacgatatagtgtgtgtgtgtgagagagaaaaacaaagacAGACAAATGTACTCAAAGGCAGTCATTTCTGATCAAGAGTACAGGAGGCTGTTTGGAATGACCTGTGAGAAACCATGTGAAACAGTGATATTACTGCTGCCAATCAAATGAAACCCTTTTTTTTACTCCCAAGAAACAATCAGCATGTTATCTAGAACAATATAGCTGGGCGCTGTGATGTTTTCCAATGCATGAAATGCCTTAGTTTCTCGAAGGATCATCTCTGGTTTTAGAGCTCTTGCATAAGAATGTGTGTCTGGCTGGAAAAGCAATTCAAGCTGACATACAACGTAGATTCACCAAGCTGGAAAAGCAATCGGGCGCTAGGGGTTGGGAGGAGTGGGTTAGGGCTCAGGCACAGCCAACATCAgattcatcctctcctctctgactcccaGTTACACCCCACGCCCTAGCCACTCactacacccacccacccacccacccgtgTGCTGCAGCTGAGTTCATCTAAGAGACCTTTTGGTTCTATCAAACAGGAAGAAAAACATTGAATCAAATGACATAATCTCTGCACCACATGCCATTGGATGCATGCAATTTAATTCCAGATGttaatgtgatgtgtgtgtatggtATGATGAGTGTGTgcatggagaggggagagggcggTGCTTTGGCTAACTGATAATTGACTAGAACCAAAGAGCTCTCGAGGTGCAATAGAGAATAATGGAATGTCTGAGACCAACAGGCTGTATGTGAACTGGGATCGGCTTTAGGACAGATATGTTGCATCTGGGACAGACCTAGAGCTGGGTTTCTATCTGTGCAGCTGTGCCATATGGCCTCGCTATGACATCCCCTACACATCTgctaactcactctctctcatcccatacaAACCATTTGGAATCAGGCTAAGAGAAACAGGAAACCGGAGTATGGTGGTGTTCACAAAGCTAAACTAGAGAGAGGTGGATGAAAGAAATGCTCCATGATTCAATGATTCGCCTGGTcatgtatattttttaaagaatccgttttaaaaaaaatatttttattttttggggtTGCAATTCTAAGAAGATTTGAGTTTGTTTGCTTTGCTGTGCAGCCTAATCGTCCATGCACCTTGTCCATTCACTGTTATGGAGATTATATGGAATGAATGTAAACGCATAGGCCTGTCGACTGATGTGGGATCAGTTTGTTGTAGTAGATGTCTGAGGCCTGATAATACTCTTAACACATTTCGCTGATCTGAGACTAGCACAATGAGGAATTTGGATATGGAGGGAAGTGCCTCTCAACGAGAtattgtgtctatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttaggattGAGGCATGAGAGCAAGACCCCAACCAATCAGAAACAACTAGAACCTTTTGTAAACTGTAGCAAAACTCTATCAGCACCCATAAGCATTTGGGACAGAAATCATACAcagattgtttttgtttttctacaAGGTCATAGGAAAAGTACCCAGAaacattttttcttcttctccttttcATTGAATGCACCGTTGTAGTCAAGGCATTGGCAGAGGAGTACATACAGTTTGGCACAAATGGTCAGGCCCAACAGAAAGGCTCATCACATTGAAAAGGAATGTAGTTAGGAAGGTCCCTGCGTAAAgagtatgaactttgaactttaAACCCcttggaaaacaaaacaaaaaaacattaagtcaaacaacaacaaaaaaaagatacCTATTAAGTAAAACATCCTTTTACTGAAGCATTAGCTTCTCACATGGCATTCAGAAAACAAAAGCACCGGTCCACGGGTTCACAGAAGGAGCCCAGCAGATCAGAAAATAACACTAACCAGAGCCTGACAGAACACAGTCACTcccccccccccacacacacacacacacatacacccacctgTTCGAGATGATAGGTGGAGTCGATGCGTGGTTTGATCTTGCCCTGTTTATAGAGGTCCAGGATGGTGGTCATGGCCTGCTGAATCACCTCCACCTCTCCGTCCAGGTAGCCCAGGTGGAAGCCACACACTGACTTGTTGTTCTGGATAAGGCTGAGTGTGTGGATGGAGAACTGGTGGTACCAGGTCTTAGCCACCGCCAGAAGGTTCTTCTTCTGGCCTGCTAGCATGTTAGCTGCACCTGCAAGGGGAGAGAGCGTAAAGGGTTAAAGGGTGTTGATG

Function

NR:

description
synaptic vesicle membrane protein VAT-1 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1256152 True 3121 lncRNA 0.45 2 69321662 69334729

Neighbor

gene id symbol gene type direction distance location
LOC110538155 LOC106600992 coding upstream 144 69315451 ~ 69321518 (+)
LOC110538150 LOC106600987 coding upstream 92462 69197666 ~ 69229200 (+)
LOC110538148 NA coding upstream 145693 69171519 ~ 69175969 (+)
LOC110538147 LOC107084780 coding upstream 152774 69166428 ~ 69168888 (+)
trnac-gca-6 NA coding upstream 212519 69109072 ~ 69109143 (+)
LOC110538157 LOC106600994 coding downstream 68264 69402993 ~ 69435277 (+)
LOC110538162 LOC106600999 coding downstream 276070 69610799 ~ 69612255 (+)
LOC110486238 LOC106607270 coding downstream 395528 69730257 ~ 69735305 (+)
LOC110538170 LOC106601006 coding downstream 464945 69799674 ~ 69819817 (+)
LOC110538173 LOC106607273 coding downstream 520051 69823215 ~ 69875030 (+)
G1104776 NA non-coding upstream 6369 69315093 ~ 69315293 (+)
G1104775 NA non-coding upstream 6598 69314759 ~ 69315064 (+)
G1104732 phb non-coding upstream 7298 69310503 ~ 69314364 (+)
G1104770 NA non-coding upstream 24093 69297239 ~ 69297569 (+)
G1104768 NA non-coding upstream 31430 69288974 ~ 69290232 (+)
G1104781 NA non-coding downstream 17312 69352041 ~ 69437721 (+)
G1104821 NA non-coding downstream 70409 69405138 ~ 69405394 (+)
G1104828 NA non-coding downstream 76513 69411242 ~ 69452170 (+)
G1104877 NA non-coding downstream 124618 69459347 ~ 69459604 (+)
G1104885 NA non-coding downstream 134994 69469723 ~ 69469943 (+)
G1104162 NA other upstream 789801 68528281 ~ 68531861 (+)
G1104149 LOC106600798 other upstream 816367 68504041 ~ 68505295 (+)
G1103416 eif1b other upstream 1313185 67987694 ~ 68048717 (+)
LOC110538103 LOC106600823 other upstream 1511599 67793428 ~ 67810071 (+)
G1105194 NA other downstream 687979 70022708 ~ 70048987 (+)
G1105281 NA other downstream 827960 70162689 ~ 70194672 (+)
G1105357 NA other downstream 990229 70324958 ~ 70327126 (+)
G1105393 NA other downstream 1036026 70370755 ~ 70371211 (+)

Expression


Co-expression Network