G1105466


Basic Information

Item Value
gene id G1105466
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 70587166 ~ 70588997 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1256949
tccatgtatatattttttggtttTATGATTTTTAAACAAATATAAGATTAATTAcagcataatttacagatatgtTTTTTCAAATAAGATCTACAGAGTGAACTCAATTACCGATTCAACTGAGCACTTAAGTCAGGAAGTGATGGACAAGTGTGGGGTTGTGTGATGTGGCATCACATCATGCACATATACAGTCAAACAGAAGTGAAATATCACTTGAAACTGATACTAACATTATGcaaattacaaaaaaaacaaggTCAACACATTCAAGAAGTATTAgcttaaaataaatcattcatacAGTATGAGAAAGGCACTACATAAACCATTTAGGCAAAGACTAGTGCAGTACTGCGGCAATGATCATCTCTATTGTTATGGTTTAATGAAAACAACAAATGGTATTCTCATTATGACAAACTATGAAGGATAAAGGGGTATGGTATGAATTCAAAACACCAAAGAATAATGTACATTTCTATCTACAATAACAGGTTGGCATTCATTGTCATCAATCTTGTCCTGGAGGGAGCTCtgcagtggtcactagctggcacagccagtcataaaatcagattttaaacccaaccctaacccacactGATAACCCCAACCTTAAATTAAGGGGAAAAAAGTTACTTTttcttttcatacatttttacatcaccAATTATGAATTTGCAGCTGGTCCAGCTAGTGGAAATTGctcagggcaagattcatgacaaacaTCAACGTACTCTACAATCCAGGGAAGAAATCAGTATCTTCCCTTCAACTGAGACACGCTGCCTGTCGGCTGAGAGCAGGGCTGAGCCCAggggagaaggtcagagaaaTATCCTGCCATTATcaatgccatttcagacacCTGTGGATTATAGATTTTTGAAGAAAACGGGGAGTTAAAAGATTTAAAATGAGTCTGGCTCGTTCGTCTCTTCACATGGGTGACGCCACGTCAGAGCTCAACTCCATGTCCAGAGTGAGGGAGTCTGGGAAGACAGAAAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1256949 True 1015 lncRNA 0.38 2 70587166 70588997

Neighbor

gene id symbol gene type direction distance location
LOC118937908 NA coding upstream 204945 70382169 ~ 70382221 (+)
LOC110538185 kbrs2 coding upstream 538921 70044585 ~ 70048245 (+)
LOC110539166 LOC106601013 coding upstream 619678 69965506 ~ 69967488 (+)
LOC110538177 LOC106607277 coding upstream 629646 69952422 ~ 69957520 (+)
LOC110538175 LOC106601009 coding upstream 651788 69907421 ~ 69935378 (+)
LOC110538197 LOC106601026 coding downstream 51967 70640964 ~ 70664813 (+)
LOC110538199 LOC106607392 coding downstream 145242 70734239 ~ 70736353 (+)
si:ch73-141c7.1 LOC106601031 coding downstream 156538 70745535 ~ 70750237 (+)
LOC110538201 LOC106601034 coding downstream 163517 70752514 ~ 70754545 (+)
LOC110538203 LOC106601033 coding downstream 167657 70756654 ~ 70758166 (+)
G1105540 NA non-coding upstream 1506 70585417 ~ 70585660 (+)
G1105539 NA non-coding upstream 1874 70584966 ~ 70585292 (+)
G1105535 NA non-coding upstream 6567 70580339 ~ 70580599 (+)
G1105531 NA non-coding upstream 10236 70576566 ~ 70576930 (+)
G1105529 NA non-coding upstream 14668 70572239 ~ 70572498 (+)
G1105476 stat3 non-coding downstream 6422 70595419 ~ 70596175 (+)
G1105565 NA non-coding downstream 49045 70638042 ~ 70638477 (+)
G1105573 NA non-coding downstream 76803 70665800 ~ 70666048 (+)
G1105619 LOC106601032 non-coding downstream 172045 70761042 ~ 70774919 (+)
LOC110538205 LOC106601037 non-coding downstream 230166 70807167 ~ 70827806 (+)
G1105393 NA other upstream 215955 70370755 ~ 70371211 (+)
G1105357 NA other upstream 260040 70324958 ~ 70327126 (+)
G1105281 NA other upstream 392494 70162689 ~ 70194672 (+)
G1105194 NA other upstream 538179 70022708 ~ 70048987 (+)
LOC110538173 LOC106607273 other upstream 731971 69823215 ~ 69875030 (+)
G1105467 LOC106601028 other downstream 23306 70612303 ~ 70633971 (+)
G1105655 NA other downstream 313908 70902905 ~ 70906429 (+)
psmg3 psmg3 other downstream 1352554 71941515 ~ 71942804 (+)
LOC110538241 LOC106607115 other downstream 1428596 72016045 ~ 72019145 (+)
G1109505 NA other downstream 2716428 73305425 ~ 73306154 (+)

Expression


Co-expression Network