Gene
RNA
| Item | Value |
|---|---|
| gene id | G1105476 |
| gene name | stat3 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048576.1 |
| NCBI id | CM023230.2 |
| chromosome length | 102853256 |
| location | 70595419 ~ 70596175 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| stat3 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including animal organ development; cardiac muscle tissue regeneration; and generation of neurons. Predicted to be located in cytoplasm and nucleus. Is expressed in several structures, including blastomere; epidermal superficial stratum; head; immature eye; and nervous system. Human ortholog(s) of this gene implicated in several diseases, including autoimmune disease (multiple); carcinoma (multiple); hyper IgE recurrent infection syndrome 1; reproductive organ cancer (multiple); and type 2 diabetes mellitus. Orthologous to human STAT3 (signal transducer and activator of transcription 3). |
| description |
|---|
| signal transducer and activation of transcription factor 3, partial |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1256959 | True | 513 | lncRNA | 0.50 | 2 | 70595419 | 70596175 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118937908 | NA | coding | upstream | 213198 | 70382169 ~ 70382221 (+) |
| LOC110538185 | kbrs2 | coding | upstream | 547174 | 70044585 ~ 70048245 (+) |
| LOC110539166 | LOC106601013 | coding | upstream | 627931 | 69965506 ~ 69967488 (+) |
| LOC110538177 | LOC106607277 | coding | upstream | 637899 | 69952422 ~ 69957520 (+) |
| LOC110538175 | LOC106601009 | coding | upstream | 660041 | 69907421 ~ 69935378 (+) |
| LOC110538197 | LOC106601026 | coding | downstream | 44789 | 70640964 ~ 70664813 (+) |
| LOC110538199 | LOC106607392 | coding | downstream | 138064 | 70734239 ~ 70736353 (+) |
| si:ch73-141c7.1 | LOC106601031 | coding | downstream | 149360 | 70745535 ~ 70750237 (+) |
| LOC110538201 | LOC106601034 | coding | downstream | 156339 | 70752514 ~ 70754545 (+) |
| LOC110538203 | LOC106601033 | coding | downstream | 160479 | 70756654 ~ 70758166 (+) |
| G1105466 | NA | non-coding | upstream | 6422 | 70587166 ~ 70588997 (+) |
| G1105540 | NA | non-coding | upstream | 9759 | 70585417 ~ 70585660 (+) |
| G1105539 | NA | non-coding | upstream | 10127 | 70584966 ~ 70585292 (+) |
| G1105535 | NA | non-coding | upstream | 14820 | 70580339 ~ 70580599 (+) |
| G1105531 | NA | non-coding | upstream | 18489 | 70576566 ~ 70576930 (+) |
| G1105565 | NA | non-coding | downstream | 41867 | 70638042 ~ 70638477 (+) |
| G1105573 | NA | non-coding | downstream | 69625 | 70665800 ~ 70666048 (+) |
| G1105619 | LOC106601032 | non-coding | downstream | 164867 | 70761042 ~ 70774919 (+) |
| LOC110538205 | LOC106601037 | non-coding | downstream | 222988 | 70807167 ~ 70827806 (+) |
| G1105661 | NA | non-coding | downstream | 252313 | 70848488 ~ 70848715 (+) |
| G1105393 | NA | other | upstream | 224208 | 70370755 ~ 70371211 (+) |
| G1105357 | NA | other | upstream | 268293 | 70324958 ~ 70327126 (+) |
| G1105281 | NA | other | upstream | 400747 | 70162689 ~ 70194672 (+) |
| G1105194 | NA | other | upstream | 546432 | 70022708 ~ 70048987 (+) |
| LOC110538173 | LOC106607273 | other | upstream | 740224 | 69823215 ~ 69875030 (+) |
| G1105467 | LOC106601028 | other | downstream | 16128 | 70612303 ~ 70633971 (+) |
| G1105655 | NA | other | downstream | 306730 | 70902905 ~ 70906429 (+) |
| psmg3 | psmg3 | other | downstream | 1345376 | 71941515 ~ 71942804 (+) |
| LOC110538241 | LOC106607115 | other | downstream | 1421418 | 72016045 ~ 72019145 (+) |
| G1109505 | NA | other | downstream | 2709250 | 73305425 ~ 73306154 (+) |
