G1105619 (LOC106601032)


Basic Information

Item Value
gene id G1105619
gene name LOC106601032
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 70761042 ~ 70774919 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1257115
AACTCCAGGACCATGACCATCTCTGGCTTGAGATCATAGGCCCCCAGACACTGGACCAGTTTGGGGTGGTGCAGGTAGTTCATCAGCTCCATCTCTTTACGGGCCGCCTCCCTCTCCTTGACTCGCCGGCCCTTGTAGAACTTTCCGGCACACACACGGCCCGTCTGCTTGTGAGTGAGTTTGAACACCTGGCCAAACCTCCCCACTCCCAGTTTCTCCAGTACATTGTAGTGATCGGTGACCTTGTGGGTGGAGTCGATGGTGACGTCCTCATATGTCCGAGGAGACTCCTCCTCTTGTGGCTCAGCTATCTGCTCCATCTTGATAAGCTGAGACTCCTCACTGGGCTCGCTCACCCCCACCACGTTGTAGGCCCTCACCCGGAAGCAGTACTCCGCCTGAGGCTCAAGCCCTGAGCGCACCTTGTAAGAAGTACTCTTGCAATGGGCTGAGAGCGCACTCCAGTCCCCAGACTCAGCGGGGCCTTTTCTCCTCACCTCCACCACATAGCCCAGGACAGCACTGCCTCCGTCGTAGCAGGGCCCAGACCAGGACAGgaccaaacagagaggagagacagagaggagagacaccacAGGGCTGGAAGCTGGGGACTGGGGCCGCTCTATGACAGAAAGAATGAGGGTGTGATGCGCCGAGCTCTTGCGGTCTCGTACTACAACGGTGTAGCGACCTGAATGCTCAGGTCCTGGCTCTGCTATCACCAACGTAGTGCTCTGATCACTGCTCTCTACCCACAACTCAGACCCATCTACAACCGGTTCTTTATTTCGTATCCAGCAGGACACCACAGGGGGACTTCCGCAGAACACACACGTCAGACGGGCTGTCTCTCCTAGCCGTGCCTCAATGTAGGATGGGGGATCCTTAAACTGCAACGAGACTGTCCCCGAGCTGGCTCTCTTCTTTGGCGTGACTTCTGTGGAGACTTTTCGGGGTCCTCCTGTGCTCGGGGTGTTAGAGCTTATTGTGGAGCTGGATTGTCTGAAGACACTGTCATTGTTGGAGGACAGTAGTAACTTTGAGCCTCTGTTCTCCATAATGTTGAGGGGAGTGGAAGTGTGTGAAGTTGCGTTCAGGACTCCCCAGATAGGCTTAAAGTctctcacacacacagctgcgcTGCTGGAGGTCTTTCCCGCTCGGTTCTCTGCCACACAGGTGTAGGCGCCCGCGTCCTCAGGTAGGCATTCCCTCACCACCAACCTAGCCTCACTGCCATCGAAGAGGGGCTTCCCAAAAAACACTGCCTCACCATTGTGCAGCCAGGACACACTGATTGGCTGACTTCCTGTGATAACCCCTCGGAGTGTGACGTCACTTCCTTCATCTGCCGAGCAGTCCTCCAAAGACTCTGTGAACAGGGGTGGATCCAGACTTCTGAGGGGGGTTGGTGTGTGGCAGCTGTCCCcTGTACTAGAGGCTGTGTCTATCCCAGTCCTAGTGGCAGTAGCAGAAGTGATACTGGCTGCCAGGATGTTTTTTCCCTGCCCAGGGGAAGTGTTGGTGGGTCCGATGTACATCCTGAGGGTTGATACATAGCGCTTCTTGGAGCTGCTGTCACTGCTCATGTCCGGCTCCACAATGTCTCTGCATTCAACGCACAAACTTAAACAGTCATTTCCCGAGCCGCTTATCaaacatcctctccctctctcggtcaCTGttgctctct
>TU1257119
GTGGAATACTGCAGTTTCACTGATCTGCTTGTGGTACGCCAGTGATCTGAGCACACttcagcattgtgtgtgtgttgtcttacctctcacacacacagctgcgcTGCTGGAGGTCTTTCCCGCTCGGTTCTCTGCCACACAGGTGTAGGCGCCCGCGTCCTCAGGTAGGCATTCCCTCACCACCAACCTAGCCTCACTGCCATCGAAGAGGGGCTTCCCAAAAAACACTGCCTCACCATTGTGCAGCCAGGACACACTGATTGGCTGACTTCCTGTGATAACCCCTCGGAGTGTGACGTCACTTCCTTCATCTGCCGAGCAGTCCTCCAAAGACTCTGTGAACAGGGGTGGATCCAGACTTCTGAGGGGGGTTGGTGTGTGGCAGCTGTCCCCTGGATGAGATGGTGCAGGTGGGGTGAGAGACAGGGTAACAGGGGGTGAATGGGacgggggtcaggggtcaggggacaGAGAGTATCATAAGCACATTTGAAATTCATACAGCGGGCCATCTGTTCTATGACAGCCTGATAAGCAGGC

Function

NR:

description
PREDICTED: myosin light chain kinase, smooth muscle-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1257115 False 1696 lncRNA 0.56 10 70761042 70774919
TU1257119 True 540 lncRNA 0.55 2 70770473 70771516

Neighbor

gene id symbol gene type direction distance location
LOC110538203 LOC106601033 coding upstream 2876 70756654 ~ 70758166 (+)
LOC110538201 LOC106601034 coding upstream 6497 70752514 ~ 70754545 (+)
si:ch73-141c7.1 LOC106601031 coding upstream 10805 70745535 ~ 70750237 (+)
LOC110538199 LOC106607392 coding upstream 24689 70734239 ~ 70736353 (+)
LOC110538197 LOC106601026 coding upstream 96229 70640964 ~ 70664813 (+)
LOC110538205 LOC106601037 coding downstream 32248 70807167 ~ 70827806 (+)
trnaa-ugc-56 NA coding downstream 133570 70908489 ~ 70908564 (+)
LOC110538209 LOC106601040 coding downstream 209812 70984731 ~ 70986552 (+)
LOC110538210 LOC106607311 coding downstream 212207 70987126 ~ 70991795 (+)
LOC110538212 LOC106601045 coding downstream 246343 71021262 ~ 71039796 (+)
G1105573 NA non-coding upstream 94994 70665800 ~ 70666048 (+)
G1105565 NA non-coding upstream 122565 70638042 ~ 70638477 (+)
G1105476 stat3 non-coding upstream 164867 70595419 ~ 70596175 (+)
G1105466 NA non-coding upstream 172045 70587166 ~ 70588997 (+)
G1105540 NA non-coding upstream 175382 70585417 ~ 70585660 (+)
G1105661 NA non-coding downstream 73569 70848488 ~ 70848715 (+)
G1105664 NA non-coding downstream 76451 70851370 ~ 70852131 (+)
G1105662 NA non-coding downstream 85023 70859942 ~ 70860164 (+)
G1105669 NA non-coding downstream 87695 70862614 ~ 70862829 (+)
G1105467 LOC106601028 other upstream 127071 70612303 ~ 70633971 (+)
G1105393 NA other upstream 389831 70370755 ~ 70371211 (+)
G1105357 NA other upstream 433916 70324958 ~ 70327126 (+)
G1105281 NA other upstream 566370 70162689 ~ 70194672 (+)
G1105194 NA other upstream 712055 70022708 ~ 70048987 (+)
G1105655 NA other downstream 127986 70902905 ~ 70906429 (+)
psmg3 psmg3 other downstream 1166632 71941515 ~ 71942804 (+)
LOC110538241 LOC106607115 other downstream 1242674 72016045 ~ 72019145 (+)
G1109505 NA other downstream 2530506 73305425 ~ 73306154 (+)
LOC110538462 rpc11 other downstream 2609889 73384755 ~ 73386199 (+)

Expression


Co-expression Network