G1105744 (LOC106601043)


Basic Information

Item Value
gene id G1105744
gene name LOC106601043
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 71010056 ~ 71016479 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1257264
TTTGGCTTTAATATATTTAATTGCAAAATaaaattatatacagtacattgtgtAAGGAAAGAGGCTATGCTTTGACTAAGACCCACACCCCTCTCACAGACAGTACAAAGTCCAGGACGTCTTATGTCCAGAGTAAGAGCAGAAATACAATACATAAGCATACATATTTCTTTGTTTCTGAAACTGAATGCAACTCAATGCTTTCAGTGTCATTCGCGACAAcataataaaaaatgaaacaaacagttctTACACAGTTtaagtagaggagagatagacattagTTTTTCCTTCTGTCTTCAGTCAGTGCTCACTGCTACGCTGAGCCGAGGGGGGGAGACTAAATGTTTGTCGTCTTTTGATCTAATGCTTGATTCAACTCTCAGGCATGAGTCGACTGGCTCATCATGGGCGACAGTGGGGGCCGTCATtgtcaagagggagagagaaagagaggttgaggCACGGGGCCCTTAATGCTGGGAAATAGACAATTCCTGGAAACAGATCTCATAGACTACATGTTGGGCGTAGGCTACCCACCCATTGTGTCTAGTTCCTGAGCCCAACACAGACTGATGCTTGGCCAACCCTCTTCATCATGGCCTTCCTACACCCACCCCATACCGCATACATTCTTAACCCTGCACTCGGGGGCAAAGAGTGCTCTCCAATATACACAAAACACATTCAAGGACAGGAAAGCTATCAGGTGAGAGGGTACATCACGTTTTGTTCTGTagttaaatacagaaataaacatgaTGGAGATCCTATATGGATAACTACACTCTAAGAAAAAACATTTTGGTTCTAGGCACcattattttgggttccatgtagagccctctttggaaagggttctactctgaacccaaaggggttctattaaaatgattctacctggaaccagaaagggttcttcAATGGGTTCTAtgaggacagccaaagaacccttttaggttctagttAGCACCTTTTTATCTGAGTGTACAGTAAATGGAGAGTGGGGATTCCTCAAACAGAAAGCCTTTGTCATTGGTTATCAACTCAATTGGAATGTCCAGCAATGCGAGACTCACGTTTTCCCAGCCAGAGGGTAGGAATTCCACTATATAATATCAAAATATTGTATAGAATGTAACTATTCTAGCATAGTCAGTGTTAGGGTTCACATCTGGGACAAGATGGAGATGGTCATGGAATGGATTGTCAAGAATGACATAAGTCCATGAACCCTACTATCTTAAATACTTTCCTAAGGTGTGTAGGAAGTCAAAACATTTACATGGCTGTCGCCACTTTTGGTTAGAGTAGCATCGAGGAATGAGATGAGTTTTCAAGAAGCAACCCTGAGGATGTTGACCTGACACTCTACACAACACCGACGGACCCTTTCTTGAACCCCTGTGTCCTTGACGATGCTCATGTGGTACAACTCATTCTGTATCAGTGCATCCAAAAAGGTCATGTGTCAGGTGTTTGGGCTGTGAGATTGTTTTGGTAGGACTCCACAGAGCTAAGCCAATCATCAGTGGGTGGAAGATGCTAAGCAGTTCTCTGTAAAATAGTTGAGTCAATGGTCCCAGTCTTGAATCCtcatgggatggagagagtgagtcTGAACATGGAGGTGAGGCAGGGTGGATGAGGACGGATCCAGGACGTCCTATCAGGAGCTGCCATCTCCGTTCTTGGTCTTGAGCACCACCAGGACCACCATGATGGGGATGAGGCAGATGGGGGTCATCACCAGGGCAAACACGATGCTGGGCGGGGGGTCGCTCAGCCCCTCGTTGGGACAGTCCGGGAAGAACCTGGAGTGGATGTTTACAAACTCATTCTCCACCATCCTGTTGGGCCAGGGGATCAGCAGACACTCTGCTATCTCCTCCGTGCACATGGTGAAGGTGTTatacatcCTCTTCACATTGTTCCAGTTGCACCAGTCTGTGTTGTTTAATAACTCCATGCCACCTACAAAAGGACTGTAGCAGGTTTCCTTAAATAAGGTCGTGTAGCACTCCGTCCTTGTGtgaaaatacacacaaatctcaCAGTATTCTTCACAATTAACATACTTATTCCCACAACCTAATCCACTGGAGAATCCTCTGTCTTCGAGGCTAACGCCGTGGTGTTGGTAGTTTGCATATGTTGTTGAGTCATGCCGTGAAGTGAAACCTGGTGTGGTAGCTTGTGGCGCCTCATAATGTCCTATCAGGCCAGCTGCTGTAGAGCTCAGTGCCCAGAGAAGAAGAGGCagaaaggagaaagaagaagaagacatggGAGACGGATTAGGGGCTTTCATTTCTGCCTGACACTGCTCTGTTCCTCTTCCCTGGTGGACCCAGATTACATATCTCAACCTTTCTGCAGGAAAGCTCTATAAAACAACAGGAAGCTCTCGTTTCCTAGGATGGGCGGCTTGGGCGGGTTCCCACAATGGGACAGACAGCCCCAGACAAGGGGAGAGCTACTGTAGCCCACTACCACTTACAATACAATCcatctctctcctattctctttctctccttctcactcaactgctctctctctctttctttctt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1257264 True 2574 lncRNA 0.46 6 71010056 71016479

Neighbor

gene id symbol gene type direction distance location
LOC110538210 LOC106607311 coding upstream 18261 70987126 ~ 70991795 (+)
LOC110538209 LOC106601040 coding upstream 23504 70984731 ~ 70986552 (+)
trnaa-ugc-56 NA coding upstream 101492 70908489 ~ 70908564 (+)
LOC110538205 LOC106601037 coding upstream 190882 70807167 ~ 70827806 (+)
LOC110538203 LOC106601033 coding upstream 251890 70756654 ~ 70758166 (+)
LOC110538212 LOC106601045 coding downstream 4783 71021262 ~ 71039796 (+)
LOC110538213 LOC106601140 coding downstream 74815 71091294 ~ 71147182 (+)
LOC110538215 LOC106601138 coding downstream 150740 71167219 ~ 71182790 (+)
LOC110538217 hop2 coding downstream 166535 71105931 ~ 71187785 (+)
LOC110538218 LOC106601135 coding downstream 182622 71199101 ~ 71220435 (+)
G1105751 NA non-coding upstream 10284 70999571 ~ 70999772 (+)
G1105735 NA non-coding upstream 31476 70978373 ~ 70978580 (+)
G1105715 NA non-coding upstream 58330 70951499 ~ 70951726 (+)
G1105710 NA non-coding upstream 66613 70943177 ~ 70943443 (+)
G1105686 NA non-coding upstream 110233 70899370 ~ 70899823 (+)
G1105743 LOC106607314 non-coding downstream 29102 71045581 ~ 71046167 (+)
G1105766 LOC106601056 non-coding downstream 32323 71048802 ~ 71049028 (+)
G1105767 LOC106607314 non-coding downstream 32728 71049207 ~ 71049475 (+)
G1105768 LOC106601056 non-coding downstream 33085 71049564 ~ 71050433 (+)
G1105769 NA non-coding downstream 34051 71050530 ~ 71051353 (+)
G1105655 NA other upstream 103627 70902905 ~ 70906429 (+)
G1105467 LOC106601028 other upstream 376085 70612303 ~ 70633971 (+)
G1105393 NA other upstream 638845 70370755 ~ 70371211 (+)
G1105357 NA other upstream 682930 70324958 ~ 70327126 (+)
G1105281 NA other upstream 815384 70162689 ~ 70194672 (+)
psmg3 psmg3 other downstream 925072 71941515 ~ 71942804 (+)
LOC110538241 LOC106607115 other downstream 1001114 72016045 ~ 72019145 (+)
G1109505 NA other downstream 2288946 73305425 ~ 73306154 (+)
LOC110538462 rpc11 other downstream 2368329 73384755 ~ 73386199 (+)
G1109778 NA other downstream 2817164 73833643 ~ 73834606 (+)

Expression


Co-expression Network