G1105743 (LOC106607314)


Basic Information

Item Value
gene id G1105743
gene name LOC106607314
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 71045581 ~ 71046167 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1257263
gagggacagagagagagtgagaggaggctTAATCTGAATCTTGAGGTAAACTAAGGTCAGGACTCACAGATGGCAGATGACAGATGAACACTTACATTAATAGATTTCACAAAAATCATCAAAGTATAGTTTCATGAGAAATGAGACATTATTGTGAATCGTAAGCAGTAAAAACGTACCTGTCAACCAAAACAGGCCTAGGTCATCGTGGATATATATGTATTCTGAAATTTTAAAAATACATCAATTATGTTATTATGGGGAATTTACATACTATCATCACTAGGTCATAATTGCTGATGGGATATGTAGTCCCATGTAAAGTAGATCTACTGATGGATCTGGGATATGTCGTCTCACCTATAGAAGTGAACCAGTGGTCCGCCTCCCAGGGGACATATCCATGGACAGGAGGGAAGGCCCCACAGTTAGACTCGGAGACGAAGCCCTGCACGGTGACCGGCGGTTCCGTCTCGTTCGGCCGGAAGAGGGTCTTAAGAGGGGCGTAGATGTTGTACCTCACCCCAGATATACAGCCTACCAGACCAGGACTGTTATGCCTCTGGATCTCATAGTCAATGTCACCC

Function

NR:

description
contactin-associated protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1257263 True 587 lncRNA 0.44 1 71045581 71046167

Neighbor

gene id symbol gene type direction distance location
LOC110538212 LOC106601045 coding upstream 5785 71021262 ~ 71039796 (+)
LOC110538210 LOC106607311 coding upstream 53786 70987126 ~ 70991795 (+)
LOC110538209 LOC106601040 coding upstream 59029 70984731 ~ 70986552 (+)
trnaa-ugc-56 NA coding upstream 137017 70908489 ~ 70908564 (+)
LOC110538205 LOC106601037 coding upstream 226407 70807167 ~ 70827806 (+)
LOC110538213 LOC106601140 coding downstream 45127 71091294 ~ 71147182 (+)
LOC110538215 LOC106601138 coding downstream 121052 71167219 ~ 71182790 (+)
LOC110538217 hop2 coding downstream 136847 71105931 ~ 71187785 (+)
LOC110538218 LOC106601135 coding downstream 152934 71199101 ~ 71220435 (+)
LOC110538220 LOC106607322 coding downstream 335041 71381208 ~ 71384698 (+)
G1105744 LOC106601043 non-coding upstream 29102 71010056 ~ 71016479 (+)
G1105751 NA non-coding upstream 45809 70999571 ~ 70999772 (+)
G1105735 NA non-coding upstream 67001 70978373 ~ 70978580 (+)
G1105715 NA non-coding upstream 93855 70951499 ~ 70951726 (+)
G1105710 NA non-coding upstream 102138 70943177 ~ 70943443 (+)
G1105766 LOC106601056 non-coding downstream 2635 71048802 ~ 71049028 (+)
G1105767 LOC106607314 non-coding downstream 3040 71049207 ~ 71049475 (+)
G1105768 LOC106601056 non-coding downstream 3397 71049564 ~ 71050433 (+)
G1105769 NA non-coding downstream 4363 71050530 ~ 71051353 (+)
G1105774 LOC106607314 non-coding downstream 11437 71057604 ~ 71058300 (+)
G1105655 NA other upstream 139152 70902905 ~ 70906429 (+)
G1105467 LOC106601028 other upstream 411610 70612303 ~ 70633971 (+)
G1105393 NA other upstream 674370 70370755 ~ 70371211 (+)
G1105357 NA other upstream 718455 70324958 ~ 70327126 (+)
G1105281 NA other upstream 850909 70162689 ~ 70194672 (+)
psmg3 psmg3 other downstream 895384 71941515 ~ 71942804 (+)
LOC110538241 LOC106607115 other downstream 971426 72016045 ~ 72019145 (+)
G1109505 NA other downstream 2259258 73305425 ~ 73306154 (+)
LOC110538462 rpc11 other downstream 2338641 73384755 ~ 73386199 (+)
G1109778 NA other downstream 2787476 73833643 ~ 73834606 (+)

Expression


Co-expression Network