Gene
RNA
| Item | Value |
|---|---|
| gene id | G1105767 |
| gene name | LOC106607314 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048576.1 |
| NCBI id | CM023230.2 |
| chromosome length | 102853256 |
| location | 71049207 ~ 71049475 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| contactin-associated protein 1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1257287 | True | 269 | lncRNA | 0.58 | 1 | 71049207 | 71049475 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110538212 | LOC106601045 | coding | upstream | 9411 | 71021262 ~ 71039796 (+) |
| LOC110538210 | LOC106607311 | coding | upstream | 57412 | 70987126 ~ 70991795 (+) |
| LOC110538209 | LOC106601040 | coding | upstream | 62655 | 70984731 ~ 70986552 (+) |
| trnaa-ugc-56 | NA | coding | upstream | 140643 | 70908489 ~ 70908564 (+) |
| LOC110538205 | LOC106601037 | coding | upstream | 230033 | 70807167 ~ 70827806 (+) |
| LOC110538213 | LOC106601140 | coding | downstream | 41819 | 71091294 ~ 71147182 (+) |
| LOC110538215 | LOC106601138 | coding | downstream | 117744 | 71167219 ~ 71182790 (+) |
| LOC110538217 | hop2 | coding | downstream | 133539 | 71105931 ~ 71187785 (+) |
| LOC110538218 | LOC106601135 | coding | downstream | 149626 | 71199101 ~ 71220435 (+) |
| LOC110538220 | LOC106607322 | coding | downstream | 331733 | 71381208 ~ 71384698 (+) |
| G1105766 | LOC106601056 | non-coding | upstream | 179 | 71048802 ~ 71049028 (+) |
| G1105743 | LOC106607314 | non-coding | upstream | 3040 | 71045581 ~ 71046167 (+) |
| G1105744 | LOC106601043 | non-coding | upstream | 32728 | 71010056 ~ 71016479 (+) |
| G1105751 | NA | non-coding | upstream | 49435 | 70999571 ~ 70999772 (+) |
| G1105735 | NA | non-coding | upstream | 70627 | 70978373 ~ 70978580 (+) |
| G1105768 | LOC106601056 | non-coding | downstream | 89 | 71049564 ~ 71050433 (+) |
| G1105769 | NA | non-coding | downstream | 1055 | 71050530 ~ 71051353 (+) |
| G1105774 | LOC106607314 | non-coding | downstream | 8129 | 71057604 ~ 71058300 (+) |
| G1105775 | LOC106601056 | non-coding | downstream | 9009 | 71058484 ~ 71058963 (+) |
| G1105776 | NA | non-coding | downstream | 10897 | 71060372 ~ 71060574 (+) |
| G1105655 | NA | other | upstream | 142778 | 70902905 ~ 70906429 (+) |
| G1105467 | LOC106601028 | other | upstream | 415236 | 70612303 ~ 70633971 (+) |
| G1105393 | NA | other | upstream | 677996 | 70370755 ~ 70371211 (+) |
| G1105357 | NA | other | upstream | 722081 | 70324958 ~ 70327126 (+) |
| G1105281 | NA | other | upstream | 854535 | 70162689 ~ 70194672 (+) |
| psmg3 | psmg3 | other | downstream | 892076 | 71941515 ~ 71942804 (+) |
| LOC110538241 | LOC106607115 | other | downstream | 968118 | 72016045 ~ 72019145 (+) |
| G1109505 | NA | other | downstream | 2255950 | 73305425 ~ 73306154 (+) |
| LOC110538462 | rpc11 | other | downstream | 2335333 | 73384755 ~ 73386199 (+) |
| G1109778 | NA | other | downstream | 2784168 | 73833643 ~ 73834606 (+) |
