G1105768 (LOC106601056)


Basic Information

Item Value
gene id G1105768
gene name LOC106601056
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 71049564 ~ 71050433 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1257288
CCGTGCTGTAGTGCTGTTTAAACTCATAGGAATGGACTACATCAACCAATGGGAGAAGTCCAAAGTCCTTGTCGACCACCACACTGCCCTCCCCAGCCCCAGCGGCCAGGTGACGTACCCACGAGGAGAGGGTGGGTGAACTCCATGGTGACAAAGGTCTGGCCAGGGAAGCGTCTCACAGCCCATGGCTGATAGTCCACTTTGATCCTGGCTAACTTCACGTTGAGCTCTGCCTGGACAAAGTGCCACTCGTTGTCGTTTAGAGGAACTGGCGAGCGTAGCGTCACGTTGAGGATGCCGTCTCCCACCATGAATATGAAGACCAGGTTCTGGGTGGCTGGGAGAAGAAGAGACAAAACAGAATGAGGGATGAAATATATTATAGAAATAAATGCCGGAAAATATTGATAATATAATTTCTAAACTTTTTCATTCATCAAGTTTCACAGCAACAAAACTTTTTGAAAATTGTAATTCGGAAATTATGTTTCCTGCCTTGGTCCTATGTGGCTTagtcggtagagcatggcacttaccATGCcaaaggttgtgggtttgattcctgcttGGGCCACCCGTATGTACATTTTAtacacgcatgactgtaagtcacgtTGGAGAAAATCGTATTTTAAATAGTGTATATTATATGAGTAATTTCATGTGATTCACACTAGATAATCTGTGGTAATTTACTGTTGAGCTCAATGCGTATGAAGTTACGCAGCCAGTCGTCTGAGTTCTCCAGGAAGACTCCGTGGGGGCGGTAGGTTTTAAAGTGGAAGGAGATGTCGACAGTGCTGCCTGGCCTGAAGGTGGGGAACTCGATGTAGGTGGGCTTGGTGAACGATATGGTATTCCAGATGCTCC

Function

NR:

description
PREDICTED: contactin-associated protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1257288 True 870 lncRNA 0.46 1 71049564 71050433

Neighbor

gene id symbol gene type direction distance location
LOC110538212 LOC106601045 coding upstream 9768 71021262 ~ 71039796 (+)
LOC110538210 LOC106607311 coding upstream 57769 70987126 ~ 70991795 (+)
LOC110538209 LOC106601040 coding upstream 63012 70984731 ~ 70986552 (+)
trnaa-ugc-56 NA coding upstream 141000 70908489 ~ 70908564 (+)
LOC110538205 LOC106601037 coding upstream 230390 70807167 ~ 70827806 (+)
LOC110538213 LOC106601140 coding downstream 40861 71091294 ~ 71147182 (+)
LOC110538215 LOC106601138 coding downstream 116786 71167219 ~ 71182790 (+)
LOC110538217 hop2 coding downstream 132581 71105931 ~ 71187785 (+)
LOC110538218 LOC106601135 coding downstream 148668 71199101 ~ 71220435 (+)
LOC110538220 LOC106607322 coding downstream 330775 71381208 ~ 71384698 (+)
G1105767 LOC106607314 non-coding upstream 89 71049207 ~ 71049475 (+)
G1105766 LOC106601056 non-coding upstream 536 71048802 ~ 71049028 (+)
G1105743 LOC106607314 non-coding upstream 3397 71045581 ~ 71046167 (+)
G1105744 LOC106601043 non-coding upstream 33085 71010056 ~ 71016479 (+)
G1105751 NA non-coding upstream 49792 70999571 ~ 70999772 (+)
G1105769 NA non-coding downstream 97 71050530 ~ 71051353 (+)
G1105774 LOC106607314 non-coding downstream 7171 71057604 ~ 71058300 (+)
G1105775 LOC106601056 non-coding downstream 8051 71058484 ~ 71058963 (+)
G1105776 NA non-coding downstream 9939 71060372 ~ 71060574 (+)
G1105747 NA non-coding downstream 11279 71061712 ~ 71062286 (+)
G1105655 NA other upstream 143135 70902905 ~ 70906429 (+)
G1105467 LOC106601028 other upstream 415593 70612303 ~ 70633971 (+)
G1105393 NA other upstream 678353 70370755 ~ 70371211 (+)
G1105357 NA other upstream 722438 70324958 ~ 70327126 (+)
G1105281 NA other upstream 854892 70162689 ~ 70194672 (+)
psmg3 psmg3 other downstream 891118 71941515 ~ 71942804 (+)
LOC110538241 LOC106607115 other downstream 967160 72016045 ~ 72019145 (+)
G1109505 NA other downstream 2254992 73305425 ~ 73306154 (+)
LOC110538462 rpc11 other downstream 2334375 73384755 ~ 73386199 (+)
G1109778 NA other downstream 2783210 73833643 ~ 73834606 (+)

Expression


Co-expression Network