G1109553


Basic Information

Item Value
gene id G1109553
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 73392650 ~ 73411665 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1261474
gccaccttcctgttcaaatgagcacagcaaggtgagtccaaaaatgtcccgtatgctgctgcataaattgtgtaatatgccagggagatatgtacacTGTATCTAAGAAAGTAATGCTAAGTGTacgttgtgtagtaagctgttagtagcccatgtgcctcaccctaataatttggtcaatTTACTGCTCTTAATTTCACCAACTGttttgacttggtggtgcacatgtagcctataacttgTTTTGTAAAAGccttcattgtctgcttatatgccccctttatttatcctaccgttctgacttggtgtacagggagaacactgtaaaaatgac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1261474 True 334 lncRNA 0.41 2 73392650 73411665

Neighbor

gene id symbol gene type direction distance location
LOC110538462 rpc11 coding upstream 6451 73384755 ~ 73386199 (+)
LOC110538463 LOC106601093 coding upstream 15906 73335021 ~ 73376744 (+)
LOC110538279 LOC106607360 coding upstream 264743 73115643 ~ 73127907 (+)
LOC110538277 LOC106601099 coding upstream 288743 73039865 ~ 73103907 (+)
LOC110538276 LOC106601100 coding upstream 369057 73011322 ~ 73023593 (+)
mgrn1b LOC106607363 coding downstream 11666 73423331 ~ 73431408 (+)
LOC110538457 LOC106601143 coding downstream 28104 73439769 ~ 73443382 (+)
LOC110538456 LOC106601142 coding downstream 48234 73459899 ~ 73462891 (+)
mpg LOC106601084 coding downstream 121612 73533277 ~ 73539888 (+)
LOC110538454 NA coding downstream 141643 73553308 ~ 73559544 (+)
G1109526 NA non-coding upstream 2309 73332894 ~ 73390341 (+)
G1109483 NA non-coding upstream 3824 73387598 ~ 73388826 (+)
G1109535 NA non-coding upstream 41626 73350624 ~ 73351024 (+)
G1109509 NA non-coding upstream 81876 73310535 ~ 73310774 (+)
G1109572 LOC106607368 non-coding downstream 57307 73468972 ~ 73471788 (+)
G1109591 NA non-coding downstream 92949 73504614 ~ 73505170 (+)
G1109636 NA non-coding downstream 143108 73554773 ~ 73555042 (+)
G1109637 NA non-coding downstream 144078 73555743 ~ 73555973 (+)
G1109608 LOC106607371 non-coding downstream 148663 73560328 ~ 73561312 (+)
G1109505 NA other upstream 86496 73305425 ~ 73306154 (+)
LOC110538241 LOC106607115 other upstream 1374360 72016045 ~ 72019145 (+)
psmg3 psmg3 other upstream 1449851 71941515 ~ 71942804 (+)
G1105655 NA other upstream 2486221 70902905 ~ 70906429 (+)
G1109778 NA other downstream 421978 73833643 ~ 73834606 (+)
G1109786 NA other downstream 434590 73846255 ~ 73846794 (+)
G1111126 LOC106578813 other downstream 1548601 74960266 ~ 75048356 (+)
G1111805 LOC105030512 other downstream 2007124 75418789 ~ 75423163 (+)
G1111961 NA other downstream 2333474 75745139 ~ 75745620 (+)

Expression


Co-expression Network