G1110045


Basic Information

Item Value
gene id G1110045
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 74304545 ~ 74306737 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1262056
tcGCTTATCACTTTTCACAAACACATTTTCATTCAGGCAACAGATTATTAATTATACTCAAGTCCTTTGAATAACTGTACAGTATATAAAATGAGTAGGACAGATACTATACACAGGGTGTGGCAGGACGGGGTGGGGGATTTTATTGTACTGAATTGTTTAAATACTAAAAGACAGTGTGAGGAGGAGTACGCTGATAAACTGCCTGTACTGTTTATGTATACAGGCTGGGAGACCAGCCTGCAGGTTGTTGGAGAGATGTTGGAGAGATGTAAAGGCACTACGTTGTAACAACGGCTGTCTTGGGAGTTTTAACGCTGAAAGCGAAAACGTGGAACTTACCCCTAACCTACCTCTGGTACTGTAACCTGACTACCATACAGCAGGttagagtgtgtgtactgtagtgtccAGTCCTACAGTACGATATGATACTCCCTGGGTCAGAGAGCATTCCTTACCAATAACTCgcaccctttctccctcctcctgcctcaagacacacaacaacacaaatgTAGTtgacacaaaacaaaaacattttctttAGCACCACACAGCATAACAAAATACATCATAAAAATGAATTCACAtataaaacaaataaacaaatacatgACTGAGGTGGAGAACAGGACAGTGGATAATAATGGTACTTTTTAAAAGATGCTTGAAAACAACGACATGTGAAATGCTCCTTGATGTAACAGACAAACGGAGGACTGGAGAAAACACTGTTAATATCCTCTTCAAGAACAACATGCTCTGAAACTCATTCTCGGGCTGAAACAGCTCCAGCTCAACCATTAAGGCCTGGAatacagaatgcttgttttccgTAACAAAATTGACACCAAACTGACACAAATAGGAAATGAAAACATGGAAGGCCGGAAAGTCATATTATCACCAGGCATGCAGAGTAAACCAGTACAACAAGGAAAGCAATCTTCTCCATTCAAGTAACCATTGGGCTCAATAGACTACTAGTAACATGGTATTGTGTGCACTTCTCAAGGTCATTCAGTGAGTCATCTGCAGTTGAAGGGTAAGCAAATATATAATTTCTATTATACAGTATGTTCAACCTTCTAACCAACACAGCGAATGTTGACAGATGAAATAGACTAGTATGGAATTGACATGCTACCGATGTAGGATCTTTCAtttgaaatgtaaaacttgtagtgtatttgtaatttttactttgaaatttcagacttgattttcccttatgaaaaatgtagCAACTCCAACAAAAATGTCCATtgattataatccacataataattcacatttcctgttgctgcaggattattttcctgctgtagcaagctggctcaaattaagatcctacaaccGTCGATACTGCGGTACACCACCAGTTAACAAGAACTGATGTCCTTATACTGCAATATGATATTATCCTACTGCAATCCAGGCATGCTAATGAGTATGCCAGATAGTGTCTCCGGCTAATTCCACTCCACTCTCATCATAATCCCTCAGGTAGCAACTCGTCTCATCTGCATCCCAGGCCTGACAAAGACAGTGCCACTCAACTGACCCATACCACAGATGACAGGCTAACCCCATGCCTCAACATGGGAGGGATCTGCCTGTCTTTTTAAATTGGTTGTTGTCAAGTGGAACAAGAGACTACTTCTAGTGgatctaattacagcacactcaAAAGGTGAGCGATGAAAAGAATGATGATAAAGGAAAAACCACTACACATTAAATATATCTAATTGGATGAACTCCCTTTGATAAATGTGCTTTGTTCCTCCTTGCCTTTGCTCAGCTACTCGCCATTGGTTGTTATTGTCGCGGAAACAAGGAAACCTCGTGTCCCATTGGCTGTTTGAGAGTCATTAAACATATGCCACAAACCCACCACATATACGGACGTATAATAATAAATATTGCGTGTGGAAACAACAGTGAAGTCCAGTTTCTTTCATTGGTACGTTGTTGTGTAGGTCAGTTCTGGTCATTCCTTAGTTGGTCGATACAACGTTAGTTAACCGTTGTAACATACTGGTCCCACGTGGAAGCCAAACTTTTGGTTGCTGCTTCCAAAGTCTGAGGGGGCCACGTCTATGACTGGCAGCAGCTCTGCTCTGGGGGAGTCGATCTCCAGGACTGTCCGCTCCTGTCCCTTA
>TU1262057
tcGCTTATCACTTTTCACAAACACATTTTCATTCAGGCAACAGATTATTAATTATACTCAAGTCCTTTGAATAACTGTACAGTATATAAAATGAGTAGGACAGATACTATACACAGGGTGTGGCAGGACGGGGTGGGGGATTTTATTGTACTGAATTGTTTAAATACTAAAAGACAGTGTGAGGAGGAGTACGCTGATAAACTGCCTGTACTGTTTATGTATACAGGCTGGGAGACCAGCCTGCAGGTTGTTGGAGAGATGTTGGAGAGATGTAAAGGCACTACGTTGTAACAACGGCTGTCTTGGGAGTTTTAACGCTGAAAGCGAAAACGTGGAACTTACCCCTAACCTACCTCTGGTACTGTAACCTGACTACCATACAGCAGGttagagtgtgtgtactgtagtgtccAGTCCTACAGTACGATATGATACTCCCTGGGTCAGAGAGCATTCCTTACCACTCgcaccctttctccctcctcctgcctcaagacacacaacaacacaaatgTAGTtgacacaaaacaaaaacattttctttAGCACCACACAGCATAACAAAATACATCATAAAAATGAATTCACAtataaaacaaataaacaaatacatgACTGAGGTGGAGAACAGGACAGTGGATAATAATGGTACTTTTTAAAAGATGCTTGAAAACAACGACATGTGAAATGCTCCTTGATGTAACAGACAAACGGAGGACTGGAGAAAACACTGTTAATATCCTCTTCAAGAACAACATGCTCTGAAACTCATTCTCGGGCTGAAACAGCTCCAGCTCAACCATTAAGGCCTGGAatacagaatgcttgttttccgTAACAAAATTGACACCAAACTGACACAAATAGGAAATGAAAACATGGAAGGCCGGAAAGTCATATTATCACCAGGCATGCAGAGTAAACCAGTACAACAAGGAAAGCAATCTTCTCCATTCAAGTAACCATTGGGCTCAATAGACTACTAGTAACATGGTATTGTGTGCACTTCTCAAGGTCATTCAGTGAGTCATCTGCAGTTGAAGGGTAAGCAAATATATAATTTCTATTATACAGTATGTTCAACCTTCTAACCAACACAGCGAATGTTGACAGATGAAATAGACTAGTATGGAATTGACATGCTACCGATGTAGGATCTTTCAtttgaaatgtaaaacttgtagtgtatttgtaatttttactttgaaatttcagacttgattttcccttatgaaaaatgtagCAACTCCAACAAAAATGTCCATtgattataatccacataataattcacatttcctgttgctgcaggattattttcctgctgtagcaagctggctcaaattaagatcctacaaccGTCGATACTGCGGTACACCACCAGTTAACAAGAACTGATGTCCTTATACTGCAATATGATATTATCCTACTGCAATCCAGGCATGCTAATGAGTATGCCAGATAGTGTCTCCGGCTAATTCCACTCCACTCTCATCATAATCCCTCAGGTAGCAACTCGTCTCATCTGCATCCCAGGCCTGACAAAGACAGTGCCACTCAACTGACCCATACCACAGATGACAGGCTAACCCCATGCCTCAACATGGGAGGGATCTGCCTGTCTTTTTAAATTGGTTGTTGTCAAGTGGAACAAGAGACTACTTCTAGTGgatctaattacagcacactcaAAAGGTGAGCGATGAAAAGAATGATGATAAAGGAAAAACCACTACACATTAAATATATCTAATTGGATGAACTCCCTTTGATAAATGTGCTTTGTTCCTCCTTGCCTTTGCTCAGCTACTCGCCATTGGTTGTTATTGTCGCGGAAACAAGGAAACCTCGTGTCCCATTGGCTGTTTGAGAGTCATTAAACATATGCCACAAACCCACCACATATACGGACGTATAATAATAAATATTGCGTGTGGAAACAACAGTGAAGTCCAGTTTCTTTCATTGGTACGTTGTTGTGTAGGTCAGTTCTGGTCATTCCTTAGTTGGTCGATACAACGTTAGTTAACCGTTGTAACATACTGGTCCCACGTGGAAGCCAAACTTTTGGTTGCTGCTTCCAAAGTCTGAGGGGGCCACGTCTATGACTGGCAGCAGCTCTGCTCTGGGGGAGTCGATCTCCAGGACTGTCCGCTCCTGTCCCTTA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1262056 False 2168 lncRNA 0.41 2 74304545 74306737
TU1262057 True 2164 lncRNA 0.41 2 74304545 74306737

Neighbor

gene id symbol gene type direction distance location
LOC110538416 LOC106601280 coding upstream 169098 74107487 ~ 74135447 (+)
LOC110538417 LOC106601161 coding upstream 202227 74096931 ~ 74102318 (+)
LOC110538418 LOC100380772 coding upstream 243874 74042618 ~ 74060671 (+)
LOC110539171 NA coding upstream 264752 74038572 ~ 74039852 (+)
LOC110538423 LOC106601285 coding upstream 269908 74004684 ~ 74034637 (+)
LOC110538414 LOC106607202 coding downstream 105003 74411740 ~ 74421010 (+)
LOC110538410 LOC103358203 coding downstream 177421 74484158 ~ 74529823 (+)
LOC118937740 mfap4 coding downstream 223295 74530032 ~ 74532544 (+)
LOC110538412 LOC106607198 coding downstream 238974 74545711 ~ 74551332 (+)
LOC118937741 NA coding downstream 257167 74563904 ~ 74567209 (+)
G1109950 NA non-coding upstream 200460 74103515 ~ 74104085 (+)
G1109948 NA non-coding upstream 209161 74095154 ~ 74095384 (+)
G1109946 NA non-coding upstream 210962 74092767 ~ 74093583 (+)
G1109929 NA non-coding upstream 230382 74067271 ~ 74074163 (+)
G1109928 LOC106601184 non-coding upstream 231229 74066549 ~ 74073316 (+)
G1110083 NA non-coding downstream 72243 74378980 ~ 74379268 (+)
G1110146 NA non-coding downstream 188323 74495060 ~ 74498797 (+)
G1110154 NA non-coding downstream 227852 74534589 ~ 74535016 (+)
G1110175 NA non-coding downstream 272442 74579179 ~ 74579609 (+)
G1110195 LOC106607192 non-coding downstream 298386 74605123 ~ 74607679 (+)
G1109786 NA other upstream 457751 73846255 ~ 73846794 (+)
G1109778 NA other upstream 469939 73833643 ~ 73834606 (+)
LOC110538462 rpc11 other upstream 918678 73384755 ~ 73386199 (+)
G1109505 NA other upstream 998391 73305425 ~ 73306154 (+)
LOC110538241 LOC106607115 other upstream 2286255 72016045 ~ 72019145 (+)
G1111126 LOC106578813 other downstream 653529 74960266 ~ 75048356 (+)
G1111805 LOC105030512 other downstream 1112052 75418789 ~ 75423163 (+)
G1111961 NA other downstream 1438402 75745139 ~ 75745620 (+)
G1111970 LOC106601177 other downstream 1444133 75750870 ~ 75753593 (+)
LOC110538360 LOC104946491 other downstream 1477613 75774976 ~ 75790602 (+)

Expression


Co-expression Network