G1110195 (LOC106607192)


Basic Information

Item Value
gene id G1110195
gene name LOC106607192
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 74605123 ~ 74607679 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1262233
GGGAAAGGCTTTTAATGCAGATTTGATCACATTTGTATGAATATCTGTTGCAAATTAGATAGAAACCTAGCGATGAAGTATTTTGCCCCCTCATCCTGAGGTTAATAATTTTCACAAAAAGGCTTGAATTCAAATACACAAGCTCTTTGAGACAACAGTTTCAGCATATACAATAGGTGAGAAACCATGTAATTCTCTCAAGGATGTATTAAGTAAAAATATTTATTCTTAAAACAAAATTACAATTAAGGGAGAGATACAGTAAAGACACTTCTCTCATCACATAGCATCTGGATGTGAGAAAATTACAGATCATCTGGCTTTTAACACAATTGAAACTCCCAAGATCAGAGTGGGAGTGGATGGGCATTACATATTGTGCTGGAAACAGAACATAGTCCTTCACAATGTACTTGTGAGTAGTCCCTTAAgtaaaactaaataaaaaaataactgaCAGGACTGCAAGCTACACTACGGCTAAAATGCAGACTGAGCATTCCCACACACTCACCTTGACAATCTCACATACAGCTAATTTTAGTTACCACCAAGCACTTCAGAATCGTAAAAATAATTCCTTAAAAACAAAACTAAAGATAAAACAGACAAAGTATACCTGTGAAACTCCCATGACAGTTTCCAGACAAGACATATACACTACAAGCACACAGACATGGACAAGGACACAAAAAGTTTAATCTGACCTCCTACCAACCTTGTGGAGGCCGGCCATGTTTGAGTTCAGTTCAAGCCCGCTTGATTGGTCGACATGGAGAAAAATCCATAATCAAGGTACAACCTTCTCACAAGTCCTGGAAACATGGATGTTTCAGAACATGTCTAAGGAGGTTCTTTTGAAGTCCACCTTGAGGGAATTGATGATAATAGTCCAGAACAAAGCCCCCGTTACAGTCAATGGCTGCATTCACACAGGCAACCCAATTTGGAGCTTTGTTCCACTaattaattggtcttttgaccaatcacatcatatCTATTCAAAGcttatctgattggtcaaaagactaattagtgaaaaaaatatatatctaaatGTTGCCAATGTGGCTGTTACTAGGAGTTGGTGAGAAGAGGATAAGTGGAGTGTTCAGTAGAGGGCTTCATTGTTGCTGCTTCGTGGCCTCTTGATCTTCTCTATGTTTTTCAGGATCATGTCATGTAATGTCACATATTGATTCCTCAGCTCTGACACAATGATCTTGAGGCTGATGTATTCCTTCTCGTCTATTTCAGTCACCGTGCGCTGGTAGTCCTCC
>TU1262234
GGGAAAGGCTTTTAATGCAGATTTGATCACATTTGTATGAATATCTGTTGCAAATTAGATAGAAACCTAGCGATGAAGTATTTTGCCCCCTCATCCTGAGGTTAATAATTTTCACAAAAAGGCTTGAATTCAAATACACAAGCTCTTTGAGACAACAGTTTCAGCATATACAATAGGTGAGAAACCATGTAATTCTCTCAAGGATGTATTAAGTAAAAATATTTATTCTTAAAACAAAATTACAATTAAGGGAGAGATACAGTAAAGACACTTCTCTCATCACATAGCATCTGGATGTGAGAAAATTACAGATCATCTGGCTTTTAACACAATTGAAACTCCCAAGATCAGAGTGGGAGTGGATGGGCATTACATATTGTGCTGGAAACAGAACATAGTCCTTCACAATGTACTTGTGAGTAGTCCCTTAAgtaaaactaaataaaaaaataactgaCAGGACTGCAAGCTACACTACGGCTAAAATGCAGACTGAGCATTCCCACACACTCACCTTGACAATCTCACATACAGCTAATTTTAGTTACCACCAAGCACTTCAGAATCGTAAAAATAATTCCTTAAAAACAAAACTAAAGATAAAACAGACAAAGTATACCTGTGAAACTCCCATGACAGTTTCCAGACAAGACATATACACTACAAGCACACAGACATGGACAAGGACACAAAAAGTTTAATCTGACCTCCTACCAACCTTGTGGAGGCCGGCCATGTTTGAGTTCAGTTCAAGCCCGCTTGATTGGTCGACATGGAGAAAAATCCATAATCAAGGTACAACCTTCTCACAAGTCCTGGAAACATGGATGTTTCAGAACATGTCTAAGGAGGTTCTTTTGAAGTCCACCTTGAGGGAATTGATGATAATAGTCCAGAACAAAGCCCCCGTTACAGTCAATGGCTGCATTCACACAGGCAACCCAATTTGGAGCTTTGTTCCACTaattaattggtcttttgaccaatcacatcatatCTATTCAAAGcttatctgattggtcaaaagactaattagtgaaaaaaatatatatctaaatGTTGCCAATGTGGCTGTTACTAGGAGTTGGTGAGAAGAGGATAAGTGGAGTGTTCAGTAGAGGGCTTCATTGTTGCTGCTTCGTGGCCTCTTGATCTTCTCTATGTTTTTCAGGATCATGTCATGTAATGTCACATATTGATTCCTCAGCTCTGACACAATGATCTTGAGGCTGATGTATTCCTTCTCGTCTATTTCAGTCACCGTGCGCTGGTAGTCCTCCACATGAGGGTACTTTGTAATTTTTGAGACTAGCTTCGCTCTGGTGATGTAAtacCTGGAAATTTGGTCCAGGTAAgaggctgcctctccttccacaGTCCTGAGCTCAGCAACAGTTTCCTCCTGGATGGATACACCAAAGTTGTTACCATCCTCTATTCTGGGGATTAAGAGCTGGACCCACATTTTGACTGTGTTGCATTTCTCTATGAGGGTTCTTATTTCTGGCTTGACTCTTTCGATCAGGTCCACCAGCTGGCCGTTGCTCTTTATCATCCCCCCTGGCATGGCAAACACCTTGGGGCCATCTTGACAGTTATCATCATCTAGTCCATCTTCCATTTtccgttttctggaattttgctaTAAACATTAACCTTGGGTTAACATAGGCATTACTTCTGTTACAGGTAGGTCTCCCTAGATC

Function

NR:

description
PREDICTED: proteasome activator complex subunit 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1262233 False 1280 lncRNA 0.39 2 74605123 74606527
TU1262234 True 1706 lncRNA 0.40 7 74605123 74607679

Neighbor

gene id symbol gene type direction distance location
LOC118937743 NA coding upstream 24581 74575886 ~ 74580542 (+)
LOC118937741 NA coding upstream 37914 74563904 ~ 74567209 (+)
LOC110538412 LOC106607198 coding upstream 53791 74545711 ~ 74551332 (+)
LOC118937740 mfap4 coding upstream 72579 74530032 ~ 74532544 (+)
LOC110538410 LOC103358203 coding upstream 75300 74484158 ~ 74529823 (+)
LOC110538404 LOC106607191 coding downstream 3243 74610922 ~ 74622960 (+)
LOC110538405 LOC106607193 coding downstream 15629 74623308 ~ 74632677 (+)
LOC110538406 LOC106607190 coding downstream 29545 74637224 ~ 74639489 (+)
LOC110538402 LOC106601265 coding downstream 122855 74730534 ~ 74761760 (+)
LOC110538400 NA coding downstream 162326 74770005 ~ 74776525 (+)
G1110175 NA non-coding upstream 25514 74579179 ~ 74579609 (+)
G1110154 NA non-coding upstream 70107 74534589 ~ 74535016 (+)
G1110146 NA non-coding upstream 106326 74495060 ~ 74498797 (+)
G1110083 NA non-coding upstream 225855 74378980 ~ 74379268 (+)
G1110045 NA non-coding upstream 298386 74304545 ~ 74306737 (+)
G1110204 NA non-coding downstream 32358 74640037 ~ 74640264 (+)
G1110205 NA non-coding downstream 32764 74640443 ~ 74640729 (+)
G1110215 NA non-coding downstream 51377 74659056 ~ 74659390 (+)
G1110216 NA non-coding downstream 52352 74660031 ~ 74660345 (+)
G1110952 NA non-coding downstream 56259 74663938 ~ 74664363 (+)
G1109786 NA other upstream 758329 73846255 ~ 73846794 (+)
G1109778 NA other upstream 770517 73833643 ~ 73834606 (+)
LOC110538462 rpc11 other upstream 1219256 73384755 ~ 73386199 (+)
G1109505 NA other upstream 1298969 73305425 ~ 73306154 (+)
LOC110538241 LOC106607115 other upstream 2586833 72016045 ~ 72019145 (+)
G1111126 LOC106578813 other downstream 352587 74960266 ~ 75048356 (+)
G1111805 LOC105030512 other downstream 811110 75418789 ~ 75423163 (+)
G1111961 NA other downstream 1137460 75745139 ~ 75745620 (+)
G1111970 LOC106601177 other downstream 1143191 75750870 ~ 75753593 (+)
LOC110538360 LOC104946491 other downstream 1176671 75774976 ~ 75790602 (+)

Expression


Co-expression Network