G1111049 (LOC106607180)


Basic Information

Item Value
gene id G1111049
gene name LOC106607180
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 74857458 ~ 74857807 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1263211
TGGTCTGCCTCCTGCTCCTCCGTCTCTGCTGTGAAGCTGGCGTTTATCCCCGAATCCACCGAGCCGTTAGCCACGGATATCACCGGCCTCGACACGGTCGGAGTGGGCGGAGTCTGGTCAGGGGGTGACGAGACAGGGGCGGGGTTGGGCGGTTTGATGGGAAGGGCTATTTGAGGTTTGGGGGTGGGCGGTTCTGGCTCGGGGGCCGACTCTGGTTCTTCCTCAATGACAGTTTCCTGTTGTTGGCGCAAGGCCTCCTCGGCTATCCGGCGCTGCTTCTCCCGCTGCCGCTTGATGGCGGTGGCGCGGTCCCGGATGGCTTTGGCCACCAGCTTGTAGTCTGCCTCACA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1263211 True 350 lncRNA 0.63 1 74857458 74857807

Neighbor

gene id symbol gene type direction distance location
LOC110538397 LOC106607181 coding upstream 25464 74792413 ~ 74831994 (+)
LOC110538398 LOC106607185 coding upstream 72873 74776771 ~ 74784585 (+)
LOC110538400 NA coding upstream 80933 74770005 ~ 74776525 (+)
LOC110538402 LOC106601265 coding upstream 95698 74730534 ~ 74761760 (+)
LOC110538406 LOC106607190 coding upstream 217969 74637224 ~ 74639489 (+)
LOC110538393 LOC106601259 coding downstream 73055 74930862 ~ 74933801 (+)
LOC110538391 LOC106601294 coding downstream 83512 74941319 ~ 74942346 (+)
LOC110538388 LOC106601254 coding downstream 102230 74960037 ~ 75102995 (+)
LOC110538390 LOC106578813 coding downstream 180535 75038342 ~ 75048707 (+)
LOC110538386 LOC106607176 coding downstream 278454 75136261 ~ 75216446 (+)
G1111048 LOC106607180 non-coding upstream 1003 74856077 ~ 74856455 (+)
G1111047 NA non-coding upstream 1910 74855258 ~ 74855548 (+)
G1111046 NA non-coding upstream 3302 74853856 ~ 74854156 (+)
G1111044 NA non-coding upstream 6316 74850491 ~ 74851142 (+)
G1111043 NA non-coding upstream 7655 74849544 ~ 74849803 (+)
G1111050 LOC106607180 non-coding downstream 171 74857978 ~ 74858222 (+)
G1111053 NA non-coding downstream 1382 74859189 ~ 74859511 (+)
G1111057 NA non-coding downstream 8614 74866421 ~ 74866992 (+)
G1111059 NA non-coding downstream 12405 74870212 ~ 74870828 (+)
G1111062 NA non-coding downstream 23086 74880893 ~ 74881122 (+)
G1109786 NA other upstream 1010664 73846255 ~ 73846794 (+)
G1109778 NA other upstream 1022852 73833643 ~ 73834606 (+)
LOC110538462 rpc11 other upstream 1471591 73384755 ~ 73386199 (+)
G1109505 NA other upstream 1551304 73305425 ~ 73306154 (+)
LOC110538241 LOC106607115 other upstream 2839168 72016045 ~ 72019145 (+)
G1111126 LOC106578813 other downstream 102459 74960266 ~ 75048356 (+)
G1111805 LOC105030512 other downstream 560982 75418789 ~ 75423163 (+)
G1111961 NA other downstream 887332 75745139 ~ 75745620 (+)
G1111970 LOC106601177 other downstream 893063 75750870 ~ 75753593 (+)
LOC110538360 LOC104946491 other downstream 926543 75774976 ~ 75790602 (+)

Expression


Co-expression Network