G1111250


Basic Information

Item Value
gene id G1111250
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 75279802 ~ 75281277 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1263422
TGAAAATGCCAGGAAACATGATTTCATGTTTTAGAACACGTGGTCTTACCCTCTTAGCTTTAATGATATTGCTCTCGAACATTATGACAGACGTGATAGGATTTGATATATTTGATAAAAATGAGAACCTGCTTTTTTTAACAGAGGTATTGCTGCTACGTAGTGTACTTGATCTCCCTTGGACGTAGGTTCATTTTCATAGACGCGCAGAACTATATGTCAGCCAGTACTGTAGCTAAAGTAAGTTAGGGTTAAGTGATTGCAAAGATGGAAATGTTTGTTTCATTTGAACCTATATAAGTAATTAAGTATGCGGAGATGACGTGTTTCATGTATACTGTAGTGTATACTCCATCAATTATAGTGATGCCTACTGAACCAGGAGCCGCATTGGTGAATCACGAATGCTGTGTTGTTATTTTGGGTGCCCCTTAACATCACGattgtattattattaatatgtacTGTATCAGTACCTTTGCCAAACATTTTTTTGATAAAGTCCTCCCTATAAATTCTTGCTGTGATATACCAATTTAGACACTGAACATGTATTATAATGCACAGTTCTTTTTTTTGACTTGACTCTATTTTAGGCCATGGAGCACTACGAATTACATGGTTTACTGTGACAAATTCTGTCAACAGTGTGAACTCTGTATCTGGAGTTAGAAgacccattttttattttttattttatttaacctttatttaactaggcaagtcagttaagaataaattcttatttacaatgacggcctaccccggccaaaccaggacgacgctgggccaattgtgtgccgccctatgggactcccaatcacggccggatgtgatacagcctgcatTTGCACGGCCTCAGACTCGCAATCATgcaacactgcacacacacatgtgcacatgcTCAATTTTGAGCATCGCTTGCTTGTTTGAATGTGTTATCCTTTTCATGGTTTGTTGCATATCACCACAAACATGCATTCAAGATATGcttctctctcacttctcctgtgtgtgtgtttgtggtggggGTGGACAGGCAGTTTCTGTCCAGTATATCCTCCTCTTTGACTTTGCCCTCATGGTAGAGGGATTGTAGACCAGTCAGCCACGATCTGCTGTATTAGGGATTCTGAAATGCTCCATTTTAAGTTGTCAAAACTTGAGGGATTTGGGGATTGCTCGGGGGAGGGAAACTGGTTGGGCTTCTTCATGATTTGgacattttattatgttttttcttttttttagaaAAGTaattgattaaattcaatttgaTAACTTGTGGTTTGCAACGTGGATGTTTGGGGGCCACAGCATGGAATGAGGGTTGGAGATGAACATTTTGAAAAAGCGGATACTGTGAAGTAATCATTTAGCACCAGAATCCCCGTAGAGCACGTTTCTCCAACTGGCGGCCCTTGTCCCAAATTTGGCCAGTGGgggattttatttggccccccaaatTTTCTGAGC

Function

NR:

description
vitellogenin-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1263422 True 1476 lncRNA 0.40 1 75279802 75281277

Neighbor

gene id symbol gene type direction distance location
LOC110538383 LOC106601250 coding upstream 260 75236926 ~ 75279542 (+)
LOC110538384 LOC106601293 coding upstream 46255 75231002 ~ 75233547 (+)
LOC110538385 LOC106607175 coding upstream 51398 75221851 ~ 75228404 (+)
LOC110538386 LOC106607176 coding upstream 63356 75136261 ~ 75216446 (+)
LOC110538388 LOC106601254 coding upstream 176807 74960037 ~ 75102995 (+)
LOC110538378 LOC106601246 coding downstream 162711 75443988 ~ 75463480 (+)
LOC110538377 f10a1 coding downstream 229722 75510999 ~ 75517780 (+)
LOC110538373 LOC106601242 coding downstream 312474 75593751 ~ 75608737 (+)
LOC110538372 LOC106601241 coding downstream 338061 75619338 ~ 75623953 (+)
LOC110538366 LOC106607160 coding downstream 356977 75638254 ~ 75649590 (+)
G1111287 NA non-coding upstream 81226 75198303 ~ 75198576 (+)
G1111284 NA non-coding upstream 89844 75189725 ~ 75189958 (+)
G1111275 NA non-coding upstream 100031 75179572 ~ 75179771 (+)
G1111267 NA non-coding upstream 109084 75170500 ~ 75170718 (+)
G1111240 NA non-coding upstream 151213 75128347 ~ 75128589 (+)
G1111306 NA non-coding downstream 2607 75283884 ~ 75284105 (+)
G1111307 NA non-coding downstream 2862 75284139 ~ 75284459 (+)
G1111312 LOC106601248 non-coding downstream 6854 75288131 ~ 75294663 (+)
G1111798 NA non-coding downstream 112221 75393498 ~ 75414066 (+)
G1111871 NA non-coding downstream 253463 75534740 ~ 75536458 (+)
G1111126 LOC106578813 other upstream 231446 74960266 ~ 75048356 (+)
G1109786 NA other upstream 1433008 73846255 ~ 73846794 (+)
G1109778 NA other upstream 1445196 73833643 ~ 73834606 (+)
LOC110538462 rpc11 other upstream 1893935 73384755 ~ 73386199 (+)
G1109505 NA other upstream 1973648 73305425 ~ 73306154 (+)
G1111805 LOC105030512 other downstream 137512 75418789 ~ 75423163 (+)
G1111961 NA other downstream 463862 75745139 ~ 75745620 (+)
G1111970 LOC106601177 other downstream 469593 75750870 ~ 75753593 (+)
LOC110538360 LOC104946491 other downstream 503073 75774976 ~ 75790602 (+)
LOC110538356 LOC106607146 other downstream 567328 75838066 ~ 75853712 (+)

Expression


Co-expression Network