G1111798


Basic Information

Item Value
gene id G1111798
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 75393498 ~ 75414066 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1264031
TTCAGCTTTAATAAGTCTCAACAAGAGCTTGTTGTTGCCCAGAGTGGAATATTTGCTTTAAGAAATTGGGACGGTATGCAAACAGGGAGCCATCTTAAAAGCATTTCTCTGTTGAACATCAGTGCTTCCACACTTGACAATGCTGTCATGTTGTAGGGTTTCAGTTAGCCGTGGTCTGAGTTCAGCTGAAGGAGCGCCCTACTAACGTAAAGAGCTGGAGGGAGCACAGCTTCTACACAGTACTTCACATGTCAAGTGGGACTTCCGCTTCCCACGCCATCACTAATCCCACAGCCCTCTGCCAGGATCCTATGGGAGCCAGAGTGGACATCAGTTATCTGGCTGAGTGGAGGTACACCTGGATTGTCTAACACGTCACATGACTTCTGTAGCATGATTCTCACTGGAAAGATTGATAAAATATGAGGTCAAGATATGTCATGGAATGAAAAGGATTGGCATTATTCCATTAGAGGAAATTATCTGTGTAGAGAAAGGTAGactgagaaggggggggggggctgtgtctTTTTGCGGAGGTGACGGAATTCAGGGAGACACCCAGAAACAAATGAGAGCTGTCACCCAGCATATGATGCTGCCTCTGCTGTTTACCAAGGATGGGGAAAGATTGATGACGGACGTCCCCTGAAGACAGCCCATCAACGAGACAGGCAAACAAACATCCCCTGAAGACATCCCATCAAatagacaggcaaacagacatcCCCTGAAGACATCCCATCAAatagacaggcaaacagacatcCCCTGAAGACATCCCATCAAatagacaggcaaacagacatcCCCTGGAGACATCCCATCAAatagacaggcaaacagacatcCCCTGAAGACATCCCATCAAatagacaggcaaacagacatcCCCTGAAGACATCCCATCAAatagacaggcaaacagacatcCCCTGAAGACATCCCATCAAATAGACAGGCAACAGACATCCCCTGGAGACATCCCATCAAatagacaggcaaacagacatcCCCTGAAGACATCCCATCAAatagacaggcaaacagacagccCCTGA

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1264031 True 1061 lncRNA 0.47 2 75393498 75414066

Neighbor

gene id symbol gene type direction distance location
LOC110538383 LOC106601250 coding upstream 113956 75236926 ~ 75279542 (+)
LOC110538384 LOC106601293 coding upstream 159951 75231002 ~ 75233547 (+)
LOC110538385 LOC106607175 coding upstream 165094 75221851 ~ 75228404 (+)
LOC110538386 LOC106607176 coding upstream 177052 75136261 ~ 75216446 (+)
LOC110538390 LOC106578813 coding upstream 344791 75038342 ~ 75048707 (+)
LOC110538378 LOC106601246 coding downstream 29922 75443988 ~ 75463480 (+)
LOC110538377 f10a1 coding downstream 96933 75510999 ~ 75517780 (+)
LOC110538373 LOC106601242 coding downstream 179685 75593751 ~ 75608737 (+)
LOC110538372 LOC106601241 coding downstream 205272 75619338 ~ 75623953 (+)
LOC110538366 LOC106607160 coding downstream 224188 75638254 ~ 75649590 (+)
G1111312 LOC106601248 non-coding upstream 98835 75288131 ~ 75294663 (+)
G1111307 NA non-coding upstream 109039 75284139 ~ 75284459 (+)
G1111306 NA non-coding upstream 109393 75283884 ~ 75284105 (+)
G1111250 NA non-coding upstream 112221 75279802 ~ 75281277 (+)
G1111287 NA non-coding upstream 194922 75198303 ~ 75198576 (+)
G1111871 NA non-coding downstream 120674 75534740 ~ 75536458 (+)
G1111872 NA non-coding downstream 124219 75538285 ~ 75538518 (+)
G1111874 NA non-coding downstream 125542 75539608 ~ 75539812 (+)
G1111890 NA non-coding downstream 149350 75563416 ~ 75563759 (+)
G1111911 NA non-coding downstream 173075 75587141 ~ 75587364 (+)
G1111126 LOC106578813 other upstream 345142 74960266 ~ 75048356 (+)
G1109786 NA other upstream 1546704 73846255 ~ 73846794 (+)
G1109778 NA other upstream 1558892 73833643 ~ 73834606 (+)
LOC110538462 rpc11 other upstream 2007631 73384755 ~ 73386199 (+)
G1109505 NA other upstream 2087344 73305425 ~ 73306154 (+)
G1111805 LOC105030512 other downstream 4723 75418789 ~ 75423163 (+)
G1111961 NA other downstream 331073 75745139 ~ 75745620 (+)
G1111970 LOC106601177 other downstream 336804 75750870 ~ 75753593 (+)
LOC110538360 LOC104946491 other downstream 370284 75774976 ~ 75790602 (+)
LOC110538356 LOC106607146 other downstream 434539 75838066 ~ 75853712 (+)

Expression


Co-expression Network