G1112203


Basic Information

Item Value
gene id G1112203
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 76291796 ~ 76293584 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1264503
caaaaaaggttatcctatggggatagCCGAATAACTATTTTGGAGCAAAAGCACATGCCTGTGAATGTACACCTTACTCATGATTCTcagtatctctgtccctctgtctgtcagtTTACACATCCCTCCATTCTTGTTCAGACCTACAACCACTATGACACTCATCTCCCCATGTATCAGCTTCCTctagcatgtctctctctcccccctcttatAAATCTTTCAGTCAAGTTGGAAAGCAAGACTTATTAAATGATTGATAGCAGGGGCGAGGCATGAGAAAAAAAGGGGCAAGAGAAAAGCAGGACTTTTTTGAAGCCCTCAGACGTCTGGGAGGCAGAGGTGACGGGAGAAtggtagaggggaagagagtgagggggagagattaGAGAGGTTAATATAGGAGAGGGAACACAGAGGTGGACAGGCTGGGAGGCCAGGGCAGAGGCCAATGATCCAGTCAGAGCAAATCCCCATTCAGGGCTTGTTTGAAGGCCAAGCTTTCAGGGACTAATTTAACCCCATCTAACTGGCAAAGCTCTCTCTTggcctctctcttgccctctttcACCCTcccttgctctcgctctctcttttctctctctctttctcttgctccttatcgctctttccctctctctctccaaggccCACATATATTGTGTGTCACCTTGAGTTATTAGGATGGGGGGCAGGGATGTAATAAAATGGAGGGAGACCTGTGAGTTATGGATGAGAGTCCACTGGATTATAGAGAATGAGAAGAGCCCGAGAAAGGGTAAGAGAAAATATAAATGGGACGAGGGATAAGGAGGACAGATGACAGCGGTGAAGATACTATCTCTCTAAGTCCATAATGCAGGCTGCTTTTTCAATGTCAACTCTTAGTTTATCCTGTAAACACATGTCGGTCTCAGACACTCTTTATTAATATAGAATATGCCTTTTTTTTCTTCCTCCCCCAATACATGTTGCCCTATTTTCTCTTTCTGTCAATGTCTGTCCTCGCTTCCACTACATCTCACCCCCACAATCCCAGAATGCACTACAATACAAGTACCTACTTTTTAACAATTAACTGTTACCTAGCAACAGTGTGAGTGAAAGAGGTATAGGGAGAAAGGTTTTAGGCAGTAAAGAGAAGTAATTCTTTATAGTACTGTTCAATTATTTTCTCATACAATAAAatatcaaacatacatgtattatatGAATTAAGAGAACATGAATTTACTCAATTTAGTACATGAGCATTGGGCAAAACGGCAGATGTTTTGAGGTTGATTGcatcacacatactgtatactatatacaCCCACACAAGCACTTAACACTGGATAGGAACTGGGAGAGAATTTGGCTGGATGATGCTCCAGGACAGGTGTTGCAGTGTCTATACATAGTGTGTACCTTCTAAGATAGTAGGAGTAGGCATTGAGGAGCTGTCCCCAGCGCTGTGAGGGCCAAAAGGCATCCAGACACAACTGAAGAGACAGCAGCACACAGCTGATACACAGCAGCCCAACATACATGAGCTCCATTGACACCGACAACCACAACATtcctatagggagagagaggatcaaatcacacacatggacacacactaAATGCAGAAACACATACATATAGAAAGGATTCAGACAAAGATAACAGTTGGGTGTGTAATATACtgcaggtggcaggtagcctagtggttagcgtgttgggccagtaaccgaaaggttgttagatCAAGTCCCCGAcctgacaatgtgaaaatctgtcgttatgaacaaggcaattaacc
>TU1264504
AATAAAATGGAGGGAGACCTGTGAGTTATGGATGAGAGTCCACTGGATTATAGAGAATGAGAAGAGCCCGAGAAAGGGTAAGAGAAAATATAAATGGGACGAGGGATAAGGAGGACAGATGACAGCGGTGAAGATACTATCTCTCTAAGTCCATAATGCAGGCTGCTTTTTCAATGTCAACTCTTAGTTTATCCTGTAAACACATGTCGGTCTCAGACACTCTTTATTAATATAGAATATGCCTTTTTTTTCTTCCTCCCCCAATACATGTTGCCCTATTTTCTCTTTCTGTCAATGTCTGTCCTCGCTTCCACTACATCTCACCCCCACAATCCCAGAATGCACTACAATACAAGTACCTACTTTTTAACAATTAACTGTTACCTAGCAACAGTGTGAGTGAAAGAGGTATAGGGAGAAAGGTTTTAGGCAGTAAAGAGAAGTAATTCTTTATAGTACTGTTCAATTATTTTCTCATACAATAAAatatcaaacatacatgtattatatGAATTAAGAGAACATGAATTTACTCAATTTAGTACATGAGCATTGGGCAAAACGGCAGATGTTTTGAGGTTGATTGcatcacacatactgtatactatatacaCCCACACAAGCACTTAACACTGGATAGGAACTGGGAGAGAATTTGGCTGGATGATGCTCCAGGACAGGTGTTGCAGTGTCTATACATAGTGTGTACCTTCTAAGATAGTAGGAGTAGGCATTGAGGAGCTGTCCCCAGCGCTGTGAGGGCCAAAAGGCATCCAGACACAACTGAAGAGACAGCAGCACACAGCTGATACACAGCAGCCCAACATACATGAGCTCCATTGACACCGACAACCACAACATtcctatagggagagagaggatcaaatcacacacatggacacacactaAATGCAGA
>TU1264505
AATAAAATGGAGGGAGACCTGTGAGTTATGGATGAGAGTCCACTGGATTATAGAGAATGAGAAGAGCCCGAGAAAGGGTAAGAGAAAATATAAATGGGACGAGGGATAAGGAGGACAGATGACAGCGGTGAAGATACTATCTCTCTAAGTCCATAATGCAGGCTGCTTTTTCAATGTCAACTCTTAGTTTATCCTGTAAACACATGTCGGTCTCAGACACTCTTTATTAATATAGAATATGCCTTTTTTTTCTTCCTCCCCCAATACATGTTGCCCTATTTTCTCTTTCTGTCAATGTCTGTCCTCGCTTCCACTACATCTCACCCCCACAATCCCAGAATGCACTACAATACAAGTACCTACTTTTTAACAATTAACTGTTACCTAGCAACAGTGTGAGTGAAAGAGGTATAGGGAGAAAGGTTTTAGGCAGTAAAGAGAAGTAATTCTTTATAGTACTGTTCAATTATTTTCTCATACAATAAAatatcaaacatacatgtattatatGAATTAAGAGAACATGAATTTACTCAATTTAGTACATGAGCATTGGGCAAAACGGCAGATGTTTTGAGGTTGATTGcatcacacatactgtatactatatacaCCCACACAAGCACTTAACACTGGATAGGAACTGGGAGAGAATTTGGCTGGATGATGCTCCAGGACAGGTGTTGCAGTGTCTATACATAGTGTGTACCTTCTAAGATAGTAGGAGTAGGCATTGAGGAGCTGTCCCCAGCGCTGTGAGGGCCAAAAGGCATCCAGACACAACTGAAGAGACAGCAGCACACAGCTGATACACAGCAGCCCAACATACATGAGCTCCATTGACACCGACAACCACAACATtcctatagggagagagaggatcaaatcacacacatggacacacactaAATGCAGAAACACATACATATAGAAAGGATTCAGACAAAGATAACAGTTGGGTGTGTAATATACtgcaggtggcaggtagcctagtggttagcgtgttgggccagtaaccgaaaggttgttagatCAAGTCCCCGAcctgacaatgtgaaaatctgtcgttatgaacaaggcaattaacc

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1264503 False 1789 lncRNA 0.44 1 76291796 76293584
TU1264504 False 916 lncRNA 0.41 1 76292497 76293412
TU1264505 True 1088 lncRNA 0.41 1 76292497 76293584

Neighbor

gene id symbol gene type direction distance location
LOC110538963 grin2b coding upstream 5270 76174135 ~ 76287434 (+)
LOC110538964 LOC106601209 coding upstream 118626 76163989 ~ 76173170 (+)
LOC110538334 wbp2 coding upstream 172634 76113279 ~ 76119162 (+)
LOC110538965 zg14 coding upstream 185015 76104913 ~ 76106781 (+)
LOC110538336 LOC100380702 coding upstream 186816 76099381 ~ 76104980 (+)
LOC110538328 LOC106601207 coding downstream 8520 76302104 ~ 76327286 (+)
LOC118937910 NA coding downstream 56700 76350284 ~ 76350336 (+)
LOC110538327 LOC106601204 coding downstream 59324 76352908 ~ 76359278 (+)
LOC110538324 LOC106607100 coding downstream 87232 76380816 ~ 76419385 (+)
LOC100136171 LOC100136171 coding downstream 171158 76464742 ~ 76470326 (+)
G1112202 NA non-coding upstream 754 76289019 ~ 76291042 (+)
G1112175 NA non-coding upstream 11878 76215168 ~ 76279918 (+)
G1112191 NA non-coding upstream 33287 76256103 ~ 76258509 (+)
G1112159 NA non-coding upstream 108621 76182822 ~ 76183175 (+)
G1112215 NA non-coding downstream 34298 76327882 ~ 76328257 (+)
G1112211 NA non-coding downstream 46005 76339589 ~ 76341567 (+)
G1112238 NA non-coding downstream 85569 76379153 ~ 76379379 (+)
G1112079 NA other upstream 3294 76287598 ~ 76288502 (+)
G1111968 LOC106601158 other upstream 395923 75895612 ~ 75895873 (+)
LOC110538356 LOC106607146 other upstream 438084 75838066 ~ 75853712 (+)
LOC110538360 LOC104946491 other upstream 503505 75774976 ~ 75790602 (+)
G1111970 LOC106601177 other upstream 538203 75750870 ~ 75753593 (+)
G1112082 NA other downstream 6476 76300060 ~ 76300527 (+)
LOC110538313 LOC106601291 other downstream 437311 76730857 ~ 76732118 (+)
G1113861 LOC100136012 other downstream 1298137 77591721 ~ 77624996 (+)
G1113968 NA other downstream 1480634 77774218 ~ 77819621 (+)

Expression


Co-expression Network