G1112211


Basic Information

Item Value
gene id G1112211
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 76339589 ~ 76341567 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1264537
AATCAGGTTTTAATACAAATTATCATTATCATACTGATAAGAAATAGTAACAAAAATAAAATTGCATTAGACATACAAAGCATAATGTGAAACCAAACATGTTCATATTTACACATATCTCAATGTGCAGCGAGCAAATATGCTCTGTCAGATTTCAAGGCACTCAAGATctatccgtctgtctgtctgtcagtccatgGGTGTGTCTGGGGGATAGGTTGATTCAGACAAACGGAAGTTAACCTACACAATAAGACTAATGGTACAAAGCATAAAATAATTACATAACTAAAAAGGGGAGGGGTCCAGTTAGCAGTGAGGTTAGTACGAATGTTCCATTCCATGTATGGACATTGGCAAATACATTATATTCTTTGTCTTATTCAGCACACTACAGTAGGGTTGTAAGTCAAACGGGGTAATGATCGTTGACAGTTTCCGAAATTGGATTCTGTTTGCGACACTAGTCAATTCATCCTTCTATTTGGTTTTGAGTGTTTTGGCCTTGTTTTATTCTGAGCCTAATTgagaaataaatcaaatgtaagcAAGAATAGTTCAGGACTATGATTCTGAAATAATGAGATACTGTCGGTCAAAACTCTCTGACTCCCCTCTACCTTCTCCAACGAATATATGAGGGCTGTAAAAGTTTCATCAACTTTGAAAATGTTGTCCCACTTTATATTAAGAGCCCATGAAAACTAAACATGGACTTGGTAATATGTGGGCAGGACAGGTAGGTTATTACTATGTGGGCAGGACAGGTAAGTTATTACTATGTGGGCAGGACAGGTAGGTTATTACTATGTGGGCAGGACAGGTAGGTTATTACTATGTGGGCAGGACAGGTAGGTTATTACTATGTGGGCAGGACATGTAGGTTATTACTATGTGGGCAGGACAGGTAGGTTATTACTATGTGGGCAGGACAGGTAGGTTATTACTATGTGGGCAGGACAGGTAGGTTATTACTATGTGGGCAGGACAGGTAGGTTATTACTATGTGGGCAGGACAGGTAGGTTATTACTATGTGGGCAGGACAGGTAGGTTATTACTATGTGGGCAGGACAGGTAGGTTATAACTATGTGGGCAGGACAGGTAGGTTATTACTATGTGGGCAGGACAGGTAGGTTATTACTATGTGGGCAGGACAGGTAGGTTATTACTATGTGGGCAGGACAGGTAGGTTATTACTATGTGGGCAGGACATGTAGGTTATTACTATGTGGGCAGGACAGGTAGGTTATTACTATGTGGGCAGGACAGGTAGGTTATTACTATGTGGGCAGGACAGGTAGGTTATTACTATGTGGGCAGGACAGGTAGGTTATTACTATGTGGGCAGGACAGGTAGGTTATTACTATGTGGGCAGGACAGGTAGGTTATTACTATGTGGGCAGGACAGGTAGGTTATTACTATGTGGGCAGGACAGGTAGGTTATTACTATGTGGGCAGGACAGGTAGGTTATAACGATGTAAATCCATATGTTTAGACACACTTCAGTGGGAACCAAAGATACATGGATGAAAATCTGTGGATAACAACTCTCCCCTTTTGTATCCCACACTCATATCCATACCTAATTGTACAAAAAACGATCAGATCGTAAGATATTGAGCCTGTCCCTTGGGCTAGTCTTCTCCTTCTAGTTTGCGGTCTTCTTTCGCAGGACAAAGTAGATTATACTGGAGATGAAGGTGAACGCAAAGGAGATCCAGGCCAGAATGAAGGAGTGGCCATACCAACCATCCGATTCATTCTTGTGAAAGATGTCTGTGTAGATGGAGGCAGCGATCATGATGC
>TU1264538
AATCAGGTTTTAATACAAATTATCATTATCATACTGATAAGAAATAGTAACAAAAATAAAATTGCATTAGACATACAAAGCATAATGTGAAACCAAACATGTTCATATTTACACATATCTCAATGTGCAGCGAGCAAATATGCTCTGTCAGATTTCAAGGCACTCAAGATctatccgtctgtctgtctgtcagtccatgGGTGTGTCTGGGGGATAGGTTGATTCAGACAAACGGAAGTTAACCTACACAATAAGACTAATGGTACAAAGCATAAAATAATTACATAACTAAAAAGGGGAGGGGTCCAGTTAGCAGTGAGGTTAGTACGAATGTTCCATTCCATGTATGGACATTGGCAAATACATTATATTCTTTGTCTTATTCAGCACACTACAGTAGGGTTGTAAGTCAAACGGGGTAATGATCGTTGACAGTTTCCGAAATTGGATTCTGTTTGCGACACTAGTCAATTCATCCTTCTATTTGGTTTTGAGTGTTTTGGCCTTGTTTTATTCTGAGCCTAATTgagaaataaatcaaatgtaagcAAGAATAGTTCAGGACTATGATTCTGAAATAATGAGATACTGTCGGTCAAAACTCTCTGACTCCCCTCTACCTTCTCCAACGAATATATGAGGGCTGTAAAAGTTTCATCAACTTTGAAAATGTTGTCCCACTTTATATTAAGAGCCCATGAAAACTAAACATGGACTTGGTAATATGTGGGCAGGACAGGTAGGTTATAACTATGTGGGCAGGACAGGTAGGTTATTACTATGTGGGCAGGACAGGTAGGTTATTACTATGTGGGCAGGACAGGTAGGTTATTACTATGTGGGCAGGACAGGTAGGTTATTACTATGTGGGCAGGACATGTAGGTTATTACTATGTGGGCAGGACAGGTAGGTTATTACTATGTGGGCAGGACAGGTAGGTTATTACTATGTGGGCAGGACAGGTAGGTTATTACTATGTGGGCAGGACAGGTAGGTTATTACTATGTGGGCAGGACAGGTAGGTTATTACTATGTGGGCAGGACAGGTAGGTTATTACTATGTGGGCAGGACAGGTAGGTTATTACTATGTGGGCAGGACAGGTAGGTTATTACTATGTGGGCAGGACAGGTAGGTTATAACGATGTAAATCCATATGTTTAGACACACTTCAGTGGGAACCAAAGATACATGGATGAAAATCTGTGGATAACAACTCTCCCCTTTTGTATCCCACACTCATATCCATACCTAATTGTACAAAAAACGATCAGATCGTAAGATATTGAGCCTGTCCCTTGGGCTAGTCTTCTCCTTCTAGTTTGCGGTCTTCTTTCGCAGGACAAAGTAGATTATACTGGAGATGAAGGTGAACGCAAAGGAGATCCAGGCCAGAATGAAGGAGTGGCCATACCAACCATCCGATTCATTCTTGTGAAAGATGTCTGTGTAGATGGAGGCAGCGATCATGATGC
>TU1264539
AATCAGGTTTTAATACAAATTATCATTATCATACTGATAAGAAATAGTAACAAAAATAAAATTGCATTAGACATACAAAGCATAATGTGAAACCAAACATGTTCATATTTACACATATCTCAATGTGCAGCGAGCAAATATGCTCTGTCAGATTTCAAGGCACTCAAGATctatccgtctgtctgtctgtcagtccatgGGTGTGTCTGGGGGATAGGTTGATTCAGACAAACGGAAGTTAACCTACACAATAAGACTAATGGTACAAAGCATAAAATAATTACATAACTAAAAAGGGGAGGGGTCCAGTTAGCAGTGAGGTTAGTACGAATGTTCCATTCCATGTATGGACATTGGCAAATACATTATATTCTTTGTCTTATTCAGCACACTACAGTAGGGTTGTAAGTCAAACGGGGTAATGATCGTTGACAGTTTCCGAAATTGGATTCTGTTTGCGACACTAGTCAATTCATCCTTCTATTTGGTTTTGAGTGTTTTGGCCTTGTTTTATTCTGAGCCTAATTgagaaataaatcaaatgtaagcAAGAATAGTTCAGGACTATGATTCTGAAATAATGAGATACTGTCGGTCAAAACTCTCTGACTCCCCTCTACCTTCTCCAACGAATATATGAGGGCTGTAAAAGTTTCATCAACTTTGAAAATGTTGTCCCACTTTATATTAAGAGCCCATGAAAACTAAACATGGACTTGGTAATATGTGGGCAGGACAGGTAGGTTATTACTATGTGGGCAGGACAGGTAAGTTATTACTATGTGGGCAGGACAGGTAGGTTATTACTATGTGGGCAGGACAGGTAGGTTATTACTATGTGGGCAGGACAGGTAAGTTATTACTATGTGGGCAGGACAGGTAGGTTATTACTATGTGGGCAGGACAGGTAGGTTATTACTATGTGGGCAGGACAGGTAGGTTATTACTATGTGGGCAGGACATGTAGGTTATTACTATGTGGGCAGGACAGGTAGGTTATTACTATGTGGGCAGGACAGGTAGGTTATTACTATGTGGGCAGGACAGGTAGGTTATTACTATGTGGGCAGGACAGGTAGGTTATTACTATGTGGGCAGGACAGGTAGGTTATTACTATGTGGGCAGGACAGGTAGGTTATTACTATGTGGGCAGGACAGGTAGGTTATAACTATGTGGGCAGGACAGGTAGGTTATAACGATGTAAATCCATATGTTTAGACACACTTCAGTGGGAACCAAAGATACATGGATGAAAATCTGTGGATAACAACTCTCCCCTTTTGTATCCCACACTCATATCCATACCTAATTGTACAAAAAACGATCAGATCGTAAGATATTGAGCCTGTCCCTTGGGCTAGTCTTCTCCTTCTAGTTTGCGGTCTTCTTTCGCAGGACAAAGTAGATTATACTGGAGATGAAGGTGAACGCAAAGGAGATCCAGGCCAGAATGAAGGAGTGGCCATACCAACCATCCGATTCATTCTTGTGAAAGATGTCTGTGTAGATGGAGGCAGCGATCATGATGC

Function

NR:

description
epithelial membrane protein 2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1264537 False 1811 lncRNA 0.42 2 76339589 76341567
TU1264538 False 1475 lncRNA 0.41 2 76339589 76341567
TU1264539 True 1531 lncRNA 0.41 3 76339589 76341567

Neighbor

gene id symbol gene type direction distance location
LOC110538328 LOC106601207 coding upstream 12303 76302104 ~ 76327286 (+)
LOC110538963 grin2b coding upstream 53063 76174135 ~ 76287434 (+)
LOC110538964 LOC106601209 coding upstream 166419 76163989 ~ 76173170 (+)
LOC110538334 wbp2 coding upstream 220427 76113279 ~ 76119162 (+)
LOC110538965 zg14 coding upstream 232808 76104913 ~ 76106781 (+)
LOC118937910 NA coding downstream 8717 76350284 ~ 76350336 (+)
LOC110538327 LOC106601204 coding downstream 11341 76352908 ~ 76359278 (+)
LOC110538324 LOC106607100 coding downstream 39249 76380816 ~ 76419385 (+)
LOC100136171 LOC100136171 coding downstream 123175 76464742 ~ 76470326 (+)
LOC118937824 bglap coding downstream 133245 76474812 ~ 76476439 (+)
G1112215 NA non-coding upstream 11332 76327882 ~ 76328257 (+)
G1112203 NA non-coding upstream 46005 76291796 ~ 76293584 (+)
G1112202 NA non-coding upstream 48547 76289019 ~ 76291042 (+)
G1112238 NA non-coding downstream 37586 76379153 ~ 76379379 (+)
G1112443 NA non-coding downstream 435517 76777084 ~ 76778163 (+)
G1112446 NA non-coding downstream 440638 76782205 ~ 76782587 (+)
G1112431 NA non-coding downstream 465442 76807009 ~ 76836306 (+)
G1112082 NA other upstream 39062 76300060 ~ 76300527 (+)
G1112079 NA other upstream 51087 76287598 ~ 76288502 (+)
G1111968 LOC106601158 other upstream 443716 75895612 ~ 75895873 (+)
LOC110538356 LOC106607146 other upstream 485877 75838066 ~ 75853712 (+)
LOC110538360 LOC104946491 other upstream 551298 75774976 ~ 75790602 (+)
LOC110538313 LOC106601291 other downstream 389328 76730857 ~ 76732118 (+)
G1113861 LOC100136012 other downstream 1250154 77591721 ~ 77624996 (+)
G1113968 NA other downstream 1432651 77774218 ~ 77819621 (+)
LOC110538485 smarca4 other downstream 1503950 77845399 ~ 77864078 (+)

Expression


Co-expression Network