G1113270


Basic Information

Item Value
gene id G1113270
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 76976334 ~ 76978898 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1265781
ttgtttccccgcacacctggtttacattccctaatcacactacATACAGTGTATATTccctcttatttacaatgacagcctaaagGGGAAcaggggttaactgctttgttcaggggcagaacaacagatgtttacctagtcagctcagggattcaatccagcaacctttcggttactggcccaacactaggctaccctcataccatgatgcagccaccaccatgcttgaaaataagaagGCAGCtattcagtgatgtgttgtgttggatttgccctaaacataaggctttgcatttaggccaaaaagagTATTCcttttccatgtttttttttttttcagtgttACTTTACTGCCTTGTTGCATACACATGCAtgttaaaaacaaaaacatgtttatatttgtattcttcttaTCACTCTGTGATGtaagtcattattgtggagtcactactatgttgctgatccatcctcagttttccctcgtcacagccattcaactgtgttgcccaatggcctcatggtgacatccctaagcagtttccttcctttcctgcagctcagttcagaaggacgactgcatctttgatgtgtctgggtggtttaatgcTTCATCCACTgtataattattaacttgaccacgCTTAAAgatattatggtggaaaattgcAAGAATATGTTATAAtactgttattgcatcaaatggttgtttaaatgcaacagaatagagtattcttaactattgtgtgtgtgttcttctgaGGATGGACCTCTGagagataacactgacaggagatttacaatgtattttgggtgataaaacctaaagagcattccagagcatgagttaatgtttctgttctatactgtaccagggagagatggttcCAGTTTGGAGTCGGAGGACCAGACACTGGTCTCTAtacaatgaaaactgttgacacagcagatactgtctgctacGTATTATAGGTATCTTTCATAcagatcttaaccttgtgacccattgttgttcgtcatgtaggttgaaaggggtgtatcttggctataaaagacctttgtacttttgtctcggggctctcaacgaatcatctgaGCATGAATCGTCGACCAACCATgaccagccatcattatcgtaGAGCACTCAATCGATTCACTTTGTATGTGTGCGTTGTCCATATAACTTACTATGTGATTTAAGGCACTGTGGTTTTCATACTCTCATAATCAAAACATACAATATCATTCATTTACTAACCTGAAAATGAGTGGTCAATTCCTCTTCAAAAAGTAAAAAATAGTTGATCCAATTAACCATAATAAGTAGGCCTAATGAATTAGCACAGCAAGGAGGCTCTGTGGGTGGATTCAGAGATGTGATACCATCTTTTACCAGAAGATGGTGATATCACCCTTACAAATCAGAGAAAGCATTtcctacacagtacagtagttcCACAAAGTCACTACAAGGGTAATATGAATAGGGTGTTGCTGACGACTGAAAATAACTTATGTGACTCATCCAGCTATGAGTCACTAATATCCTACTTAGTGATAGAACACTGCTACCTGTGATGTGCACCAGTTAACGCCAAGAAAAAAGACCAGCTCAACAAACCTGCTAACTGATTTGTTTATCTATTTCTGAAATAGCATTGAAATGTGAGTCCCTCTCTGACTCATAGGCTTGTATACAAAGCCTGCATTGTAGTGTTTATTATGCAATTGATACAGTTGAGTCTAACAAAAGCCATTGGAGCGGTGCCAAGCCTGACACAGTGTTCCAGCATTTCTTGGAAACCCATTGGCTGACTTTTGTAATTTCTTCCAGGAAAATGAATATGCATGCCTCCAGCCAGAAAACAGCAGAGAAAACAGGGAGTGGGGaaggaagagggtgagagagaggaggttaagatgcaggagtgaaagagagagacagtacggTCCATTCATTCCAGTTTCAATCTCCCAGTGTTCGTCAATATGAGGAGCAGTCTATGGGCTCAGGCAGAGTGTAGCTGTGACAGCTCTGACATCACCACTCCTTCAAATACCCTGAGATGAGATGGGGCCCAACAAATTTCCAGCAGAGACAAGCCTATAGGATGACTCACTCACCTCACCCCATCATACAGAGGCCACCAGGAAGCTCACAGGtagctctgcctgtctgccaGATAGATGTGTACACGTTTTCTTCCATGGAACAGATATGCACCGATGAATACTTCATGACCACTAAAAGACTGTTTTCTTCTTTCAATCTAATGTAACTGACATCTACGAGGTCCTTTGAGGTGGATGAAAAGAAGAATGGTTGTTGAGGGAATAAATCACTGTTTTATTGTAGGTAATGAATGAGCCCATGGTTTATGTTTAGGAAACAGTTTTAGTGCATTTGCATCTCAAAGAAGAAAATATTCTGTAAAACTTTAAATGTAAATTCACGGAAGCACAAATATTTGACGTTACTTCCAGGAGGGCAGACTGTTTTGGTTCTACACACCACAAtaagatatatatataacatCTGTTTACAGGAGATTCTGACTTGCCTGTTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1265781 True 2565 lncRNA 0.41 1 76976334 76978898

Neighbor

gene id symbol gene type direction distance location
LOC110538299 LOC106601357 coding upstream 4245 76968770 ~ 76972089 (+)
LOC110538300 LOC106607082 coding upstream 11177 76951277 ~ 76965157 (+)
LOC118936312 LOC106589640 coding upstream 161610 76812258 ~ 76815056 (+)
LOC110538307 LOC106607087 coding upstream 164466 76809448 ~ 76811868 (+)
LOC110538313 LOC106601291 coding upstream 244218 76730857 ~ 76732118 (+)
LOC110538297 LOC106601356 coding downstream 13022 76991920 ~ 76996271 (+)
nfil3-2 LOC106607079 coding downstream 22062 77000960 ~ 77012928 (+)
LOC118937747 NA coding downstream 91974 77070872 ~ 77078590 (+)
LOC110538293 LOC106601351 coding downstream 133146 77112044 ~ 77120816 (+)
LOC110538287 LOC106601346 coding downstream 319607 77298505 ~ 77301052 (+)
G1113284 NA non-coding upstream 49211 76926756 ~ 76927123 (+)
G1113247 NA non-coding upstream 96582 76875912 ~ 76879752 (+)
G1113244 NA non-coding upstream 102742 76873365 ~ 76873592 (+)
G1112431 NA non-coding upstream 140028 76807009 ~ 76836306 (+)
G1113381 NA non-coding downstream 131909 77110807 ~ 77111076 (+)
G1113407 LOC106601347 non-coding downstream 188493 77167391 ~ 77171690 (+)
G1113639 NA non-coding downstream 242463 77221361 ~ 77221625 (+)
G1113647 NA non-coding downstream 249077 77227975 ~ 77228653 (+)
LOC110538283 LOC106607024 non-coding downstream 384197 77363072 ~ 77420925 (+)
LOC100136171 LOC100136171 other upstream 506107 76464742 ~ 76470326 (+)
G1112082 NA other upstream 675807 76300060 ~ 76300527 (+)
G1112079 NA other upstream 687832 76287598 ~ 76288502 (+)
G1111968 LOC106601158 other upstream 1080461 75895612 ~ 75895873 (+)
G1113861 LOC100136012 other downstream 612823 77591721 ~ 77624996 (+)
G1113968 NA other downstream 795320 77774218 ~ 77819621 (+)
LOC110538485 smarca4 other downstream 866619 77845399 ~ 77864078 (+)
LOC110486564 LOC106601427 other downstream 2071107 79049969 ~ 79053051 (+)
G1115550 LOC106601417 other downstream 2095768 79074666 ~ 79077216 (+)

Expression


Co-expression Network