G1114531 (LOC106601339)


Basic Information

Item Value
gene id G1114531
gene name LOC106601339
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 77390025 ~ 77445496 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1267277
GCCATTATGAATATAGAACATGTACTGTACCTGTTGGTTGGGTAGTTTAGATACAAGGGCAGGGATACGGAGGCCCCAGGGATTTGGACAGCCACTCTGTATTATGGCCGTTGGAGGCCCCTGGGTCAATGACTCAGGGCCACACAGACAGATGCGACAGTGCAGGAACTGGACAGAGTTGTTGTAGATGGGCCGAAGGACAAAACTGAACCTCAGTCTGTGTAtctggtcctcctctcctcccattcctccatcgctctccttcCTTTTGGCTCGTCCTCCTCGTCCCCTCTTCCCAACGTGTTCTCTATTTCTCAATCCTGCTTTGTTCCTCCAAGCCCTTCCTGGATGCCTGAATGATAGGACTCTAggtacctcctcttcctcttcataatattcctcatcatcctcatcttcctcttgGCCATGTGCCATGTTGCTGAGTGTCAGTGAGGAGTCAGCGGAGCAGCTGTCTCTAATGACTGACCAGCCAGGGGACACACGGGGGTCTGATAGGGGAGACACCATGCAGGACCGCACCTCCACACCCCCACCGAGGGCCCCCTTGGCGGAAAGCTTGGCAAAAACAGTCAGAGAAAATATGGGTAACACATTACTTTACCATGGTCTTATTACTGAGTTGATATTTTGTAAGTAGAGTGTAATAAGTATTGTAATTACACTAGTACTGTAATTTGTAGTACTCTGTTACAACCTGCTGTGCTCTAGTGCTGTAATAGCAGGGCTACAGAGTTCTTATAGAAATGACTTATTGTGACATAGATGTGATTATAATAGCCTTCTGGTAGAAGTCTTCTCTGAGCTTGAGGCAGCTGATACTGTAGAAGACGAGCAGAGGGAGAAACACAAGTAGCACTTGCAGCAGGAGCTAcatcagcagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagagcag
>TU1267279
TCACCCGCACTTTATTTGAAGATAAAACACAAAAACTCAGCCACAGATATTTAATTTAAATAGCAACAGCACAGATAATATCAAACAAAGGGTCACAGTTACAACATAGATATATACAATACGGATCTGGATAATGGCAATTCCCCTCACACATATTCTACTCATGACATATATTTGACTTCATGTGTTCCTCCTCTTTAAACTCAGTAGTGCTTATTTCTGTTTTAACATTAGGCTATGTTCAGATTCATGCTCGTCCTATAGCCAGTAATCACACCATTCCATTCTATGAGCCCAGGTTATGACATTGTAGATACAGTGTAATGGATCAGATGCACTGAATATTATTTCTTCCAACACTTTGAGAAGTTTCTGAGGCCTGTAGACATTCATGTAGCCTCAGTCTTTCAGACCTTTACACATCTCATTGCTTCAAGCATGTGTACAccaagtatacaaaacattaaggacacattcctaatattgagttgcaccccccctcccttttgccctcagaacagccttaattatTTGGGGCATGGACTGTACAAGgtatcgaaagcgttccacagggatgctggcccatgttgacttcaatgcttcccacagttgtgtcctttaggtagtggaccattcttgatacacacgggaaactgcgGGGGGGACTCAGCAGCGTTGtaattcttgacacaaactggtgtccctggcacctactaccattccccgttcaaaggaacttaaataATTAGTCTTgaccattcactctctgaatttcacacatacacaatccatgtctcaattgtctcaaggcttaaaaatccttctttaacctgtctcctccccttcatctccactgactgaagtggatttaacaagggacatcaataagggatcataactttcacctggattcacctggttagtctatgtcatggaaagagcaggtgttctcaatgttttgtatactcagtgtatacagtgccttgcgaaagtattcggcccccttgaactttgcgaacttttgccacatttcaggcttcaaacataaagatataaaactgtatttttttgtgaagaatcaacaacaagtgggacacaataatgaagtggaacgacatttattgga

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1267277 False 1002 lncRNA 0.49 2 77390025 77441151
TU1267279 True 1126 lncRNA 0.40 2 77407012 77445496

Neighbor

gene id symbol gene type direction distance location
pglyrp6 LOC106601345 coding downstream 87820 77290430 ~ 77302205 (-)
si:ch211-194b1.1 LOC106601342 coding downstream 100439 77270633 ~ 77289586 (-)
LOC110538288 LOC106607073 coding downstream 195678 77169823 ~ 77194374 (-)
LOC110538289 LOC106601349 coding downstream 223374 77147190 ~ 77166651 (-)
LOC110538291 LOC106601350 coding downstream 247825 77131049 ~ 77142200 (-)
LOC110538465 LOC106607026 coding upstream 28 77445524 ~ 77450347 (-)
LOC110539172 LOC106607008 coding upstream 24361 77469857 ~ 77478487 (-)
LOC110538468 LOC106601163 coding upstream 48097 77493593 ~ 77501440 (-)
LOC110538477 LOC106607035 coding upstream 165324 77610820 ~ 77612826 (-)
LOC110538478 LOC106607036 coding upstream 188271 77633767 ~ 77649740 (-)
G1114503 NA non-coding downstream 92651 77296946 ~ 77297374 (-)
G1113687 NA non-coding downstream 137864 77251938 ~ 77252161 (-)
G1113686 NA non-coding downstream 138253 77251550 ~ 77251772 (-)
G1113682 NA non-coding downstream 139198 77246853 ~ 77250827 (-)
G1113665 NA non-coding downstream 149705 77240118 ~ 77240320 (-)
G1114603 LOC106607027 non-coding upstream 35672 77481168 ~ 77481478 (-)
G1114604 LOC106607027 non-coding upstream 37183 77482111 ~ 77484731 (-)
G1114605 ddx39b non-coding upstream 40946 77486442 ~ 77487466 (-)
G1114606 NA non-coding upstream 47119 77492615 ~ 77492785 (-)
LOC110538302 LOC106601359 other downstream 554742 76828760 ~ 76844798 (-)
G1113043 LOC106601201 other downstream 904740 76484372 ~ 76485285 (-)
LOC110538323 NA other downstream 956455 76428548 ~ 76478939 (-)
G1113013 NA other downstream 975814 76412940 ~ 76414211 (-)
G1112997 NA other downstream 1008298 76380928 ~ 76381727 (-)
G1114714 NA other upstream 248999 77694495 ~ 77695275 (-)
LOC110539174 prdx2 other upstream 259011 77704482 ~ 77719934 (-)
G1114809 smarca4 other upstream 413366 77858862 ~ 77862506 (-)

Expression


Co-expression Network