Gene
RNA
| Item | Value |
|---|---|
| gene id | G1113808 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048576.1 |
| NCBI id | CM023230.2 |
| chromosome length | 102853256 |
| location | 77467459 ~ 77468076 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| Transposable element Tcb1 transposase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1266413 | True | 618 | lncRNA | 0.51 | 1 | 77467459 | 77468076 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110538464 | LOC106607025 | coding | upstream | 21937 | 77432582 ~ 77445522 (+) |
| LOC110538283 | LOC106607024 | coding | upstream | 46534 | 77363072 ~ 77420925 (+) |
| LOC110538960 | LOC106607023 | coding | upstream | 113277 | 77320209 ~ 77354182 (+) |
| LOC110538285 | LOC106601344 | coding | upstream | 152232 | 77301210 ~ 77315227 (+) |
| LOC110538287 | LOC106601346 | coding | upstream | 166407 | 77298505 ~ 77301052 (+) |
| si:ch211-106h11.1 | LOC106607027 | coding | downstream | 10829 | 77478905 ~ 77484829 (+) |
| LOC110538469 | ddx39 | coding | downstream | 17262 | 77485338 ~ 77492407 (+) |
| LOC110538471 | LOC106601338 | coding | downstream | 44098 | 77512174 ~ 77518590 (+) |
| LOC110538472 | LOC100380669 | coding | downstream | 58243 | 77526319 ~ 77562873 (+) |
| LOC110538473 | LOC106601335 | coding | downstream | 95115 | 77563191 ~ 77569888 (+) |
| G1113807 | NA | non-coding | upstream | 309 | 77466918 ~ 77467150 (+) |
| G1113647 | NA | non-coding | upstream | 238806 | 77227975 ~ 77228653 (+) |
| G1113639 | NA | non-coding | upstream | 245834 | 77221361 ~ 77221625 (+) |
| G1113407 | LOC106601347 | non-coding | upstream | 295769 | 77167391 ~ 77171690 (+) |
| G1113739 | LOC106607028 | non-coding | downstream | 25565 | 77493641 ~ 77496003 (+) |
| G1113820 | NA | non-coding | downstream | 30154 | 77498230 ~ 77498477 (+) |
| G1113821 | LOC108236100 | non-coding | downstream | 30754 | 77498830 ~ 77499308 (+) |
| G1113822 | LOC106601311 | non-coding | downstream | 31593 | 77499669 ~ 77500113 (+) |
| LOC110538313 | LOC106601291 | other | upstream | 735341 | 76730857 ~ 76732118 (+) |
| LOC100136171 | LOC100136171 | other | upstream | 997232 | 76464742 ~ 76470326 (+) |
| G1112082 | NA | other | upstream | 1166932 | 76300060 ~ 76300527 (+) |
| G1112079 | NA | other | upstream | 1178957 | 76287598 ~ 76288502 (+) |
| G1111968 | LOC106601158 | other | upstream | 1571586 | 75895612 ~ 75895873 (+) |
| G1113861 | LOC100136012 | other | downstream | 123645 | 77591721 ~ 77624996 (+) |
| G1113968 | NA | other | downstream | 306142 | 77774218 ~ 77819621 (+) |
| LOC110538485 | smarca4 | other | downstream | 377441 | 77845399 ~ 77864078 (+) |
| LOC110486564 | LOC106601427 | other | downstream | 1581929 | 79049969 ~ 79053051 (+) |
| G1115550 | LOC106601417 | other | downstream | 1606590 | 79074666 ~ 79077216 (+) |
