G1113739 (LOC106607028)


Basic Information

Item Value
gene id G1113739
gene name LOC106607028
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 77493641 ~ 77496003 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1266335
TTAGCCTGTGAATCAAAGTTAGGACAAAACAACCAGATATGCTTTTATACAAATTTTCAATCACTTGCTCAATAAAGCGCAGAGATTGGAAATGGCAGTGTGTGCTGTGCCCACATCAGAGCCCAGACTTGCTCAGTGCTAGCTATACATGGACTGGTTCATTGGTTTTAAGTTATAACTCAAATGGATTGGTCTGTATACAGCAAACAAGGATGCATCTGTACATGGCTGCTCTATAGTGTCGTTATAAAACCAAAGACTTCTCAAATCACAATCTACATAGGTAAGCATGATGGCAGTGTCTAACCAATCAGAACGTCAATTTTTATTTTACAAAGTCAATCACCTAACAGGCTGTGAGGCTACTATGAACACCTGTCCCAACCTAGAAGTTGTACAAAAAGTTGAATCATATAAAAATAACACTCATGGCTAATGTAATATGGGCTTCAATATTTGAATCCTCTAATACTTTTCATGGAGTCAGAGGGAAAAGCATGTTAATTACATATATACCACTCAGATTCAGTCATGAACAAGGCTAAGGTGCATGAATTATCAACCCTTCCTAATAGGGAAGAATTTGGCATTTTAGTCATTCTAAAGAGGTCCATGTCTCACCCATACAGAATCTTAACCTCCAACTTCAGACAACTGGTATGCTAATCTCTTCGAGGTGctataacagactactgacaTGTCTATGCAAAGGAGGCCATTTGTAACCATGTAGTGCTGACCCCTTTGTAGTGTCCTCATGTCCGCTTCAGTCTCTAATGAGCAGGATATTGTCGACATGTCAACCTTCAATGGCAGAGAGCAGATTTAGACACCTCAAACATAAAGCAACATGAGTAAGAGTTTTGTTTTGTGGAGTATTGTGGATCAGTTGCTAGATTACAGGCCAGATTGAGTCTGAAACGGTCCCGCCCGCTAGTTACAAATTACATGTTTACTTCATATGCaggcatttttatttttataacaaACCAGAGGGTGGCTGAGGCTTTTTCTACCCCTCAGTCAGGATTGTAATTTGCTTCAAATCAGCAACAGGACTTCTCAATGCCAGAATCCAAGGCTTGTTCCGCTGGCGCTAGGTTAAATGTCTCACTGTTTCAGGGCTGAGGCATGGAGGAGTAAAAAAAATGGGGACTGGTCCAACATCTAATgacctatcacacacacacaaagcctcaGCCAACAGCTTCTGCGCCAGTCTGTCTCTAACCATAACATCTCTCCTTGGGGAGTTGTCTTCGTCCACTATTGCTCAGGTAATGTGGCTGTTTGACAGTGAACACTGGTGAGACCAGGAGTCAAGTCCCAGACCTCATGgaactcccctctctctgctgacAGATCTCAGCTGTTTTGTCTCTCTCAGGGCCCTCCGGTCATGCCGCTCCAAACATAGCATCGCTTCTCTCATTGGCAACCACTGTCACAACAAATATCATTACAAATACAAAAATGTCCCTTCTAGAGCATTCTGTGGAGTGTCCATCTTCTGTCCCACAAAAACATTCTTTTAGTGTCTTCATTTGGTTACGCAAATAGAAGGTATTGGAAATCTACTGGAGAAGTCACTGTTTCTATGCAAGTCTGATTCTCCTTCCACTCAAACCAGACCTGCTTGCCATTGACAGGCCTACTCTATGCTGGCCATCACCATGAAATGAAACACCTTGCCATCCTACGTCCACAAGTCTACTGGGTGTGTGTGCAGCAGCTGGGTTGGAGTCTGCATTGGGTGTGTCCCACGTTTCACTATTGTCCCCAAAGTGTGGGTTCTGTCCCAGAGTACAGTAGTGCATGGGGAGTGACAAAATAGTGACTGGGAAAATCCATATTTGTCTATTTACACACTTTGATGAACCACAAAGGACCGGGTGTCTACTCTAAGGCCGGCACTAGTCACTCATCTCTGTCCAGAATGCAGATCAACCAATCAAATTCCTTCACCCAGGCCTCCCAAAACATGCTCCAAGAGGGTGGTGGGGATCTTTGCATCTGGCTACTCTTAGGACTACTACTCTATCAGGGGCTTGGTGGGGGTAAAGTGATTGGGAGCGAGTGAGGGATTTGAGGGGGACGCTAGTCGGAGAACTTGTGTGTGTCTCCGTAGAGCCACTGCTGGGGCGGGAGGGCAACCTCGTTCAGATGACTGCACTTATCACTGCACTTGCAGGACTGCACGAACATGACAGAGTGGTCGAAGCGCTCGCCATCAGGGCAGGCAAAGGTCACGGAGGCGGTGCGTGTGCGGCGGGGCGAGCAGCAGCGGCCGTCCACACACACGCCGCAGTAGTTGGGCCGGTAGAGACGCATGCTGCGGCAGCCAGCATAGGACAGACGCAGGG

Function

NR:

description
PREDICTED: protein CYR61-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1266335 True 2363 lncRNA 0.46 1 77493641 77496003

Neighbor

gene id symbol gene type direction distance location
LOC110538469 ddx39 coding upstream 1234 77485338 ~ 77492407 (+)
si:ch211-106h11.1 LOC106607027 coding upstream 8982 77478905 ~ 77484829 (+)
LOC110538464 LOC106607025 coding upstream 48119 77432582 ~ 77445522 (+)
LOC110538283 LOC106607024 coding upstream 72716 77363072 ~ 77420925 (+)
LOC110538960 LOC106607023 coding upstream 139459 77320209 ~ 77354182 (+)
LOC110538471 LOC106601338 coding downstream 16171 77512174 ~ 77518590 (+)
LOC110538472 LOC100380669 coding downstream 30316 77526319 ~ 77562873 (+)
LOC110538473 LOC106601335 coding downstream 67188 77563191 ~ 77569888 (+)
LOC110538474 LOC106607032 coding downstream 75936 77571939 ~ 77577342 (+)
LOC110538475 LOC106607033 coding downstream 92253 77588256 ~ 77595428 (+)
G1113808 NA non-coding upstream 25565 77467459 ~ 77468076 (+)
G1113807 NA non-coding upstream 26491 77466918 ~ 77467150 (+)
G1113647 NA non-coding upstream 264988 77227975 ~ 77228653 (+)
G1113820 NA non-coding downstream 2227 77498230 ~ 77498477 (+)
G1113821 LOC108236100 non-coding downstream 2827 77498830 ~ 77499308 (+)
G1113822 LOC106601311 non-coding downstream 3666 77499669 ~ 77500113 (+)
G1113823 NA non-coding downstream 5129 77501132 ~ 77501555 (+)
G1113743 NA non-coding downstream 26964 77522967 ~ 77523232 (+)
LOC110538313 LOC106601291 other upstream 761523 76730857 ~ 76732118 (+)
LOC100136171 LOC100136171 other upstream 1023414 76464742 ~ 76470326 (+)
G1112082 NA other upstream 1193114 76300060 ~ 76300527 (+)
G1112079 NA other upstream 1205139 76287598 ~ 76288502 (+)
G1111968 LOC106601158 other upstream 1597768 75895612 ~ 75895873 (+)
G1113861 LOC100136012 other downstream 95718 77591721 ~ 77624996 (+)
G1113968 NA other downstream 278215 77774218 ~ 77819621 (+)
LOC110538485 smarca4 other downstream 349514 77845399 ~ 77864078 (+)
LOC110486564 LOC106601427 other downstream 1554002 79049969 ~ 79053051 (+)
G1115550 LOC106601417 other downstream 1578663 79074666 ~ 79077216 (+)

Expression


Co-expression Network