Gene
RNA
| Item | Value |
|---|---|
| gene id | G1114809 |
| gene name | smarca4 |
| gene type | unknown |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048576.1 |
| NCBI id | CM023230.2 |
| chromosome length | 102853256 |
| location | 77858862 ~ 77862506 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| smarca4 | Enables several functions, including DNA polymerase binding activity; RNA polymerase II-specific DNA-binding transcription factor binding activity; and lysine-acetylated histone binding activity. Contributes to RNA polymerase I core promoter sequence-specific DNA binding activity. Involved in several processes, including chromatin organization; regulation of signal transduction; and regulation of transcription, DNA-templated. Located in chromatin and nucleolus. Part of SWI/SNF complex and npBAF complex. Implicated in Coffin-Siris syndrome 4; hepatocellular carcinoma; lung non-small cell carcinoma; and rhabdoid cancer. Biomarker of prostate cancer. |
| description |
|---|
| unnamed protein product |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1267592 | False | 590 | TUCP | 0.58 | 4 | 77858862 | 77862506 |
| TU1267593 | True | 593 | TUCP | 0.57 | 4 | 77858862 | 77862506 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110538484 | LOC106607044 | coding | downstream | 29411 | 77826539 ~ 77829451 (-) |
| LOC110538481 | LOC106607039 | coding | downstream | 131164 | 77719710 ~ 77727698 (-) |
| LOC110539174 | prdx2 | coding | downstream | 138928 | 77704482 ~ 77719934 (-) |
| LOC110538478 | LOC106607036 | coding | downstream | 209122 | 77633767 ~ 77649740 (-) |
| LOC110538477 | LOC106607035 | coding | downstream | 246036 | 77610820 ~ 77612826 (-) |
| LOC110538489 | LOC106601325 | coding | upstream | 37015 | 77899521 ~ 77904255 (-) |
| LOC110538491 | il-8 | coding | upstream | 104356 | 77966821 ~ 77984741 (-) |
| LOC110538494 | LOC106607051 | coding | upstream | 157319 | 78019825 ~ 78022664 (-) |
| hmgxb4a | LOC106601319 | coding | upstream | 164418 | 78026924 ~ 78033369 (-) |
| LOC110538496 | LOC106601323 | coding | upstream | 171069 | 78033575 ~ 78036134 (-) |
| G1114801 | NA | non-coding | downstream | 9876 | 77845445 ~ 77848986 (-) |
| G1114797 | LOC106601309 | non-coding | downstream | 20510 | 77837964 ~ 77838352 (-) |
| G1114796 | NA | non-coding | downstream | 22063 | 77836493 ~ 77836799 (-) |
| G1114795 | NA | non-coding | downstream | 22426 | 77835481 ~ 77836436 (-) |
| G1114794 | NA | non-coding | downstream | 25320 | 77833161 ~ 77833542 (-) |
| G1114667 | NA | non-coding | upstream | 21740 | 77884246 ~ 77886356 (-) |
| G1114831 | LOC100286593 | non-coding | upstream | 32066 | 77894572 ~ 77895393 (-) |
| G1114847 | NA | non-coding | upstream | 71410 | 77933916 ~ 77934157 (-) |
| G1114850 | NA | non-coding | upstream | 77892 | 77940398 ~ 77940713 (-) |
| G1114852 | NA | non-coding | upstream | 81189 | 77943695 ~ 77943920 (-) |
| G1114714 | NA | other | downstream | 163587 | 77694495 ~ 77695275 (-) |
| G1114604 | LOC106607027 | other | downstream | 376350 | 77482111 ~ 77484731 (-) |
| LOC110538302 | LOC106601359 | other | downstream | 1023579 | 76828760 ~ 76844798 (-) |
| G1116006 | NA | other | upstream | 1355045 | 79217551 ~ 79218123 (-) |
| G1116120 | NA | other | upstream | 1591624 | 79454130 ~ 79454620 (-) |
| LOC110538563 | LOC106580481 | other | upstream | 2338001 | 80200038 ~ 80201563 (-) |
| LOC110539175 | LOC106601487 | other | upstream | 2512091 | 80374395 ~ 80376801 (-) |
