G1114133


Basic Information

Item Value
gene id G1114133
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 78093215 ~ 78094057 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1266793
GTCCAGCCCTACATGATTAAATTAACTCAGTTTATTCATACAAAATATCCACACAGTCAAACTATGATATTCATTCAAAACATTTAAATCGGGTAAGATATAAGAAGTAATTTCCTCTGTGTTTACTAACACTGTGCCTTCCTTTAATAGCATAGTGTAAACAGAACATTTATTGCAAACAAGCACTGTAGAAAGCGATCCAAATTAAATACATTCAAAACATCAACAATTCACTGGACTGTCCATCAGGAATTTGCATGGAAATATACAACTGATATATATGTCTTTATACAGTCAGTATGCTGTGTTACAGAAGATTACAAaagtttgttgtgtttcatgaatATCTCTGCACTTTTGTGGACAGGAGTGACAGCTCTAAAAAATGTACTGTGCCTGTTGAACCCCACCCACACTACTAGGCATTGGCATCGATTAAGCTGAACCACAGTGCACCTGTCTATGGCCCATGACGTGAATGGGCAAATGTGGTGAGGGAATGAGAGCAATTCTCAAATTGaacagtaaatcaaatcaaatcaaattgtatttgtcacatacacatggttagcagatgttaatgcgagtgtagtaaaatgcttgtgcttctagttccgacaatgcagtaataaccaatgagtaatctaacctaacaatttcacaacagctaccttgtacacacaagtgtaaagggatgaagaatatttacatgaagatatatgaatgagtgatggtacagaacggcataggcaagatgcagtagatggtatcgagtacagtatatacatatgagatgagtaattatattaaacattatattaagtggcattgtttaaagtggct
>TU1266792
TGCCTTCCTTTAATAGCATAGTGTAAACAGAACATTTATTGCAAACAAGCACTGTAGAAAGCGATCCAAATTAAATACATTCAAAACATCAACAATTCACTGGACTGTCCATCAGGAATTTGCATGGAAATATACAACTGATATATATGTCTTTATACAGTCAGTATGCTGTGTTACAGAAGATTACAAaagtttgttgtgtttcatgaatATCTCTGCACTTTTGTGGACAGGAGTGACAGCTCTAAAAAATGTACTGTGCCTGTTGAACCCCACCCACACTACTAGGCATTGGCATCGATTAAGCTGAACCACAGTGCACCTGTCTATGGCCCATGACGTGAATGGGCAAATGTGGTGAGGGAATGAGAGCAATTCTCAAATTGaacagtaaatcaaatcaaatcaaattgtatttgtcacatacacatggttagcagatgttaatgcgagtgtagtaaaatgcttgtgcttctagttccgacaatgcagtaataaccaatgagtaatctaacctaacaatttcacaacagctaccttgtacacacaagtgtaaagggatgaagaatatttacatgaagatatatgaatgagtgatggtacagaacggcataggcaagatgcagtagatggtatcgagtacagtatatacatatgagatgagtaattatattaaacattatattaagtggcattgtttaaagtggct

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1266793 False 843 lncRNA 0.36 1 78093215 78094057
TU1266792 True 709 lncRNA 0.37 1 78093349 78094057

Neighbor

gene id symbol gene type direction distance location
LOC110538500 LOC106607056 coding upstream 44186 78046893 ~ 78049029 (+)
LOC110538493 LOC106601372 coding upstream 90669 77998427 ~ 78002546 (+)
LOC110538490 LOC106607046 coding upstream 194867 77895449 ~ 77898348 (+)
LOC110538488 LOC106601324 coding upstream 197778 77890043 ~ 77895437 (+)
LOC110538506 LOC106601316 coding downstream 33576 78127633 ~ 78172914 (+)
LOC110538975 NA coding downstream 109491 78203548 ~ 78208995 (+)
LOC110538507 LOC106601383 coding downstream 130713 78224770 ~ 78319145 (+)
LOC110538508 grb2 coding downstream 238811 78332868 ~ 78384166 (+)
LOC110538976 LOC106601392 coding downstream 295878 78389935 ~ 78414270 (+)
G1114119 NA non-coding upstream 22304 78070659 ~ 78070911 (+)
G1114101 NA non-coding upstream 47595 78045414 ~ 78045620 (+)
G1114091 NA non-coding upstream 55134 78036548 ~ 78038081 (+)
G1114087 NA non-coding upstream 62045 78030525 ~ 78031170 (+)
G1114083 NA non-coding upstream 66577 78026399 ~ 78026638 (+)
G1114132 NA non-coding downstream 1077 78095134 ~ 78097327 (+)
G1114137 NA non-coding downstream 16007 78110064 ~ 78115510 (+)
G1114177 NA non-coding downstream 85368 78179425 ~ 78179653 (+)
G1114179 NA non-coding downstream 86953 78181010 ~ 78181209 (+)
LOC110538485 smarca4 other upstream 242410 77845399 ~ 77864078 (+)
G1113968 NA other upstream 273594 77774218 ~ 77819621 (+)
G1113861 LOC100136012 other upstream 468219 77591721 ~ 77624996 (+)
LOC110538313 LOC106601291 other upstream 1361097 76730857 ~ 76732118 (+)
LOC100136171 LOC100136171 other upstream 1622988 76464742 ~ 76470326 (+)
LOC110486564 LOC106601427 other downstream 955948 79049969 ~ 79053051 (+)
G1115550 LOC106601417 other downstream 980609 79074666 ~ 79077216 (+)
slc9a3r1b LOC106601421 other downstream 1097959 79161938 ~ 79196532 (+)
G1115610 NA other downstream 1109283 79203340 ~ 79204836 (+)
G1115707 NA other downstream 1282609 79376666 ~ 79377080 (+)

Expression


Co-expression Network