G1115550 (LOC106601417)


Basic Information

Item Value
gene id G1115550
gene name LOC106601417
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 79074666 ~ 79077216 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1268457
AGGGCAGCTAGAGCCCCTTGTGTACTTGAAATAAGCAGTCCAGAAAACAAGGAGTCGGTGCTTAGTCAAGTGTGGTTGAGAGTTCCATTTCTATGCAGTGCATCATCAGGTCCTCAGTTCTCTAGCTTGGACAACCTAATTTACAGAGGTAAATTcacagtttatatacagtatttattttagAACAAGTTACTACCTTGAGTACCATGGGCTCCCTCAATTGAAGTCTACTGGCTTCACCTACTGATTTCAAAACCATTGTATATGTTGGATAGATGCATACGTGAAGCCTAAGATGTTAAGGCAACAGTGTTATTGAGATCAGGAATATTTAACTAGATTGTTTTTGAAAACATTTTATGAATAGCTCTGCACATATTATTCATTGTCAGTCGTCAAAAACATTAAATAGcaattatttatacattttaaatAGAATTAGTGCAGTCTCAGTATACACACTCAGTCATTTAAACATTGTACCGGATTGTCTTGAACAAAGACAGGGCAAACAGATTTTAGTGCACAACTAGGTTGTCAAATTATCTTAAATTAGGTCAAGAATCAAGGCATTTCATCTATCCAGATGATGAATGTCAGCTGTACAATTCATTCATATTGGGATGGGTGAAACGTGTCAGTGTCCAGAGAGATGGGTAAAACGTGTCAGTGTCCAGAGAGATGGGTAAAACGTGTCAGTTACCAGAGAGATGGGTAAAACGTGTCAGTATCCAGATAGATGGATAAAACGTGGCAGTATCCAGAGAGGTGGCAGTATCCAGAGAGATGGGTAAAACGTGTCAGTGTCCAGAGAGATGGGTAAAACGTGTCAGTGTCCAGAGAGATGGGTAAAACGTGGCAGTGTCCAGAGAGATGGATAAAACGTGGCAGTGTCCAGAGAGATGGATAAAACGTGGCAGTGTCCAGAGAGATGGATAAAACGTGGCAGTGTCCAGAGAGATGGATAAAACGTGGCAGTGTCCAGAGAGATGGATAAAACGTGGCAGTGTCCAGAGAGATGGATAAAACGTGGCAGTGTCCAGAGAGATGGATAAAACGTGGCAGTATCCAGAGAGATGGATAAAACGTGGCAGTATCCAGAGAGATGGATAAAACGTGGCAGTATCCAGAGAGATGGATAAAACAGCTGAGGGATCATCCACAGTATATTGTATCATTTCCCCAGTGCAGAAGTACAGGTAACCTGTCATCAAGTGACCAAAACTAATTCTGAAAGAAAATCTGTGGCTTTTGTACCCATTGTTTTCAGTGCATGTTCACTAGTATCAGGAGAGGTCATGTTCACTAGTATCAGGAGAGGTATTGTTCACTAGTATCACGAAAGCAGCTCATTTGTCTTTCGACTTTCTTCCCTTAGGACTTCCAACCCGTGGGGACTTTCTACCCTTGGGGACTCCCTTGGTGGAGTTCACTTCACTCTTGGTCTTCTGCAGGCGGGAGAAGATCTCTTTGAACAGGGCCTTGTACTCTGGGGTGTTCTGGCCCAGCCTCTTGTCCACCTGGTCTACCTGCCGGCTGATGCCCTCCAGGGCCTCTGGGGTGGAGGGGGTCTGGGGCAGGGTGGGGGGTGCAGCAGCCATGGCTGAGGGGCCGGGGGTGGCCATGCTGTAGTCCTTCATGGAGGGGTCTCTGGAGACAGGGCGTGACGTCTGCACCCCCGCGTGGCACATGCTCTCCTCGTGGCGCCGGCACTTCCCCAGCAGCTCCTCGTATTTCTCCAGCAGGGCGTGGTACTGCTCGTCCACTTCCCTCAGGATGGACATGCCCCGCTTGCGCACGCCGTTGGCGTGGATTGCGTAGCTGCCCTGTCGCCTGCCAGAGGCGTCGCAGGCCGAGATGGCGTTGAGCGCTGTGTCGCTGCAGCTCTTCCTCACGGGGCCTCCCTGCTGCCCACCTCCTCCTGTCCCCCCGGACTCCCccgtcccctcccctccctccttttgCCCCGGTCCCTCCTCGGGTGTGTCGGTCTCGGGGGCATTGTTGAGCAGGGTCTGCTCCAGACCCTCATCCAACAGACAGACCCGTGACCTCCTCAGCTGCTGCATCTCCTGTAGCTCCGCCTCCAGCTCCTGCACTCGCAGCTGGCAGCCCTCAGCACCCAGGAGGCGTTGTTCCATAAGCTCAAACTCCTGCAGCACAGCTGTGcactccctctctgccccctccctccgGCCCCGTTCTGCCACCATGGCGGACCTCAGGGAGGAGACCACACCTTTTAGACGCTCGTTCTCCTCGTCCAGCGGCCGGCGCTCACGCTCAGACACCAGGTCCACACTGCCGGGGTTGGCCACCAGGAAGCCATCCTCATACCTGGAGAGCGATACACCACACAGAGGAGCACAAGGATACAGCAGAGTGATTGCATTCTTATGTAATCTGAA
>TU1268458
AGGGCAGCTAGAGCCCCTTGTGTACTTGAAATAAGCAGTCCAGAAAACAAGGAGTCGGTGCTTAGTCAAGTGTGGTTGAGAGTTCCATTTCTATGCAGTGCATCATCAGGTCCTCAGTTCTCTAGCTTGGACAACCTAATTTACAGAGGTAAATTcacagtttatatacagtatttattttagAACAAGTTACTACCTTGAGTACCATGGGCTCCCTCAATTGAAGTCTACTGGCTTCACCTACTGATTTCAAAACCATTGTATATGTTGGATAGATGCATACGTGAAGCCTAAGATGTTAAGGCAACAGTGTTATTGAGATCAGGAATATTTAACTAGATTGTTTTTGAAAACATTTTATGAATAGCTCTGCACATATTATTCATTGTCAGTCGTCAAAAACATTAAATAGcaattatttatacattttaaatAGAATTAGTGCAGTCTCAGTATACACACTCAGTCATTTAAACATTGTACCGGATTGTCTTGAACAAAGACAGGGCAAACAGATTTTAGTGCACAACTAGGTTGTCAAATTATCTTAAATTAGGTCAAGAATCAAGGCATTTCATCTATCCAGATGATGAATGTCAGCTGTACAATTCATTCATATTGGGATGGGTGAAACGTGTCAGTGTCCAGAGAGATGGGTAAAACGTGTCAGTGTCCAGAGAGATGGGTAAAACGTGTCAGTTACCAGAGAGATGGGTAAAACGTGTCAGTATCCAGATAGATGGATAAAACGTGGCAGTATCCAGAGAGATGGATAAAACGTGGCAGTATCCAGAGAGATGGATAAAACGTGGCAGTATCCAGAGAGATGGATAAAACGTGGCTGTATCCACAGAGATGGATAAAACGTGGCAGTATCCAGAGAGATGGATAAAACATGGCTGTATCCAGAGAGATGGATAAAACGTGGCTGTATCCAGAGATGGATAAAACGTGGCTGTATCCAGAGAGATGGATAAAATGTGGCAGTATCCAGAGAGATGGATAAAACAGCTGAGGGATCATCCACAGTATATTGTATCATTTCCCCAGTGCAGAAGTACAGGTAACCTGTCATCAAGTGACCAAAACTAATTCTGAAAGAAAATCTGTGGCTTTTGTACCCATTGTTTTCAGTGCATGTTCACTAGTATCAGGAGAGGTCATGTTCACTAGTATCAGGAGAGGTATTGTTCACTAGTATCACGAAAGCAGCTCATTTGTCTTTCGACTTTCTTCCCTTAGGACTTCCAACCCGTGGGGACTTTCTACCCTTGGGGACTCCCTTGGTGGAGTTCACTTCACTCTTGGTCTTCTGCAGGCGGGAGAAGATCTCTTTGAACAGGGCCTTGTACTCTGGGGTGTTCTGGCCCAGCCTCTTGTCCACCTGGTCTACCTGCCGGCTGATGCCCTCCAGGGCCTCTGGGGTGGAGGGGGTCTGGGGCAGGGTGGGGGGTGCAGCAGCCATGGCTGAGGGGCCGGGGGTGGCCATGCTGTAGTCCTTCATGGAGGGGTCTCTGGAGACAGGGCGTGACGTCTGCACCCCCGCGTGGCACATGCTCTCCTCGTGGCGCCGGCACTTCCCCAGCAGCTCCTCGTATTTCTCCAGCAGGGCGTGGTACTGCTCGTCCACTTCCCTCAGGATGGACATGCCCCGCTTGCGCACGCCGTTGGCGTGGATTGCGTAGCTGCCCTGTCGCCTGCCAGAGGCGTCGCAGGCCGAGATGGCGTTGAGCGCTGTGTCGCTGCAGCTCTTCCTCACGGGGCCTCCCTGCTGCCCACCTCCTCCTGTCCCCCCGGACTCCCccgtcccctcccctccctccttttgCCCCGGTCCCTCCTCGGGTGTGTCGGTCTCGGGGGCATTGTTGAGCAGGGTCTGCTCCAGACCCTCATCCAACAGACAGACCCGTGACCTCCTCAGCTGCTGCATCTCCTGTAGCTCCGCCTCCAGCTCCTGCACTCGCAGCTGGCAGCCCTCAGCACCCAGGAGGCGTTGTTCCATAAGCTCAAACTCCTGCAGCACAGCTGTGcactccctctctgccccctccctccgGCCCCGTTCTGCCACCATGGCGGACCTCAGGGAGGAGACCACACCTTTTAGACGCTCGTTCTCCTCGTCCAGCGGCCGGCGCTCACGCTCAGACACCAGGTCCACACTGCCGGGGTTGGCCACCAGGAAGCCATCCTCATACCTGGAGAGCGATACACCACACAGAGGAGCACAAGGATACAGCAGAGTGATTGCATTCTTATGTAATCTGAA

Function

NR:

description
cerebellar degeneration-related protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1268457 False 2408 TUCP 0.51 2 79074666 79077216
TU1268458 True 2272 TUCP 0.50 2 79074666 79077216

Neighbor

gene id symbol gene type direction distance location
LOC110538530 LOC106606967 coding upstream 273 79058591 ~ 79074393 (+)
LOC110538528 LOC106606979 coding upstream 16866 79054366 ~ 79057800 (+)
LOC110486564 LOC106601427 coding upstream 21615 79049969 ~ 79053051 (+)
LOC110538524 LOC106601424 coding upstream 30994 79040849 ~ 79043672 (+)
pecam1 peca1 coding upstream 62896 79004197 ~ 79011770 (+)
LOC110538532 nupl coding downstream 24706 79101922 ~ 79103731 (+)
LOC110538534 LOC106601414 coding downstream 46582 79123798 ~ 79137453 (+)
LOC110538535 LOC106606976 coding downstream 60618 79137834 ~ 79157985 (+)
slc9a3r1b LOC106601421 coding downstream 84722 79161938 ~ 79196532 (+)
LOC110538543 NA coding downstream 272024 79349240 ~ 79351338 (+)
G1115539 NA non-coding upstream 40408 79028825 ~ 79034258 (+)
G1115533 NA non-coding upstream 55201 79019230 ~ 79019465 (+)
G1115531 NA non-coding upstream 58289 79016140 ~ 79016377 (+)
G1115502 NA non-coding upstream 103664 78962560 ~ 78971002 (+)
G1115380 NA non-coding upstream 187138 78862155 ~ 78887528 (+)
G1115564 NA non-coding downstream 11884 79089100 ~ 79089546 (+)
G1115565 NA non-coding downstream 12823 79090039 ~ 79090296 (+)
G1115566 NA non-coding downstream 13459 79090675 ~ 79091050 (+)
G1115567 NA non-coding downstream 13888 79091104 ~ 79091402 (+)
G1115551 LOC106601418 non-coding downstream 26518 79103734 ~ 79105196 (+)
LOC110538485 smarca4 other upstream 1223861 77845399 ~ 77864078 (+)
G1113968 NA other upstream 1255045 77774218 ~ 77819621 (+)
G1113861 LOC100136012 other upstream 1449670 77591721 ~ 77624996 (+)
LOC110538313 LOC106601291 other upstream 2342548 76730857 ~ 76732118 (+)
G1115610 NA other downstream 126124 79203340 ~ 79204836 (+)
G1115707 NA other downstream 299450 79376666 ~ 79377080 (+)
G1115777 NA other downstream 443454 79520670 ~ 79520991 (+)
G1116250 NA other downstream 622784 79700000 ~ 79702869 (+)

Expression


Co-expression Network