XLOC_000003 (CU651657.1)


Basic Information

Item Value
gene id XLOC_000003
gene name CU651657.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 25585 ~ 27255 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000011
CCAAGTGCTGTTCAGCAGCGTAACTACAGAAATACCTCTACAACACAGCGATAGATACCTGTGTTTACCTCAGTTTACCTGTGTTTACCTCAGTTTACCTGTGTTTACCTCAGTTTACCTGTGTTTACctgtttatctgtgtttacctgtgtttatctgtgtttacctgtgtttacctgtgtttatctgtgtttacctgtgtttatctgcgtttacctgtgtttatctgtgtttacctgtgtttatctgggtttatctgtgtttacctgtgtttacctgtgtttatctgcgtttacctgtgtttatctgtgtttacctgtgtttatctgcgtttacctgtgtttatctgcgtttacctgtgtttatctgcgtttacctgtgtttatctgcgtttacctgtgtttatctgcgtttacctgtgtttatctgtgtttacctgtgtttatctgtgtttacctgtgtttacctgtgtttatctgtgtttacctgtgtttatctgtgtttatctgtgtttacctgtgtttatctgcgtttacctgtgtttatctgtgtttacctgtgtttacctgtgtttacctgtgtttatctgcgtttacctgtgtttatctgtgtttacctgtgtttacctgtgtttatctgtgtttatctgtgtttacctgtgtttacctgtgtttatctgtgtttacctgtgtttatctgtgtttacctgtgtttatctgtgtttacctgtgtttatCTGCGTTTACCTGCGTTTAcctgtgtttatctgtgtttacctgtgtttatctgcgtttacctgtgtttatctgtgtttatctgtgtttacctgtgtttatttgtgcttacctgtgtttatctgtgtttacctgtgtttacctgtgtttatctgtgtttacctgtgtttatctgtgtttacctgtgtttatctgcgtttacctgtgtttatctgtgtttacctgtgtttacctgtgtttatctgtgtttatctgtgtttacctgtgtttacctgtgtttatctgtgtttacctgtgtttatctgtgtttacctgtgtttatctgtgtttacctgtgtttatCTGCGTTTACCTGCGTTTAcctgtgtttatctgtgtttacctgtgtttatctgcgtttacctgtgtttatctgtgtttatctgtgtttacctgtgtttatttgtgcttacctgtgtttatctgtgtttacctgtgtttacctgtgtttatctgtgtttacctgtgtttatctgtgtttacctgtgtttatttgtgcttacctgtgtttatctgtgtttacctgtgtttacctgtgtttatctgtgtttacctttgtttatctgtgtttacctgtgtttatCTATGTTTACCTTTGTTTACCTGTGTTTATCTATGTTTGCCtgtgtttacctgtgtttatctatgtttacctgtgtttacctgtgtttacctgtgtttatctgtgtttaccTGTGTTCACTGCAACTCACACTGCTGTTGAGCTCTGCTGTGCTGTAGCTGAACTGTGTTACTGCAGTGTGTTGCACCTGTACTGTATTAAACTGCAGATATTCTCTATGTTCTGCTGCTGTGCTTCACTTTACTGCAGTTATTGTCGGTCAGGGAATTTCTCttattaatattcagtttctctgCTTTTACTCTGGAAACTCCC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000099319

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000011 True 1671 mRNA 0.38 1 25585 27255

Neighbor

gene id symbol gene type direction distance location
XLOC_000002 nfkbiz coding upstream 2196 18716 ~ 23389 (+)
XLOC_000001 cep97 coding upstream 9212 11822 ~ 16373 (+)
XLOC_000004 eed coding downstream 435 27690 ~ 34330 (+)
XLOC_000005 hikeshi coding downstream 9297 36552 ~ 39191 (+)
XLOC_000006 f7l coding downstream 82543 109798 ~ 119146 (+)
XLOC_000007 f7 coding downstream 92705 119960 ~ 125246 (+)
XLOC_000008 f7i coding downstream 99995 127250 ~ 134079 (+)
XLOC_000011 NA non-coding downstream 129537 156792 ~ 157282 (+)
XLOC_000018 NA non-coding downstream 328226 355481 ~ 358562 (+)
XLOC_000024 dre-mir-155 non-coding downstream 549189 576444 ~ 576521 (+)
XLOC_000026 NA non-coding downstream 767721 794976 ~ 911551 (+)
XLOC_000028 NA non-coding downstream 988557 1015812 ~ 1033638 (+)

Expression


Co-expression Network