XLOC_000030



Basic Information


Item Value
gene id XLOC_000030
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 1315289 ~ 1342237 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00003008
CTTTATATCCTTAGTATACGATGTTTTATTCATCCAACTCGAAATATAAGTCAGTCGTACATTACAGAATCCTGCGAGCTCCAGCTGTGTGAAGATTTTAACAAGGCTGGTCTGTTGTGGTCAAGGTGCCAGAAGCCCAAAATGTGATGGAGCGAGACAGATGGTGCCGAGGTGCTGATATGCATTGGAATATGTTTCATTACTGCTGCCGGCTGTCCAGTTTTACCCTACCGCCACCACATTGGCACACACTGATGCCAGTCTGCCGTTCTCCCCAAATCTGTCTAAATGACAACTGACCCGCTTTGGCTGGACGTCCTGGAACAAATGCTCCAAAAGGACAGACATCAGTAACCTCCACCCAACAAGATCCTTAATTATAATAAACCTGCCGACACACGAGACGCCACTTCCGTTAATTAAATTAAG
>TCONS_00003009
CTTTATATCCTTAGTATACGATGTTTTATTCATCCAACTCGAAATATAAGTCAGTCGTACATTACAGAATCCTGCGAGCTCCAGCTGTGTGAAGATTTTAACAAGGCTGAGACCGCCGCTCAGCTTGCTGATATTGGACCAACAACGCTTCTGGAATTAGCAAAGAGGACACAGAATCGGGATCTTTTTCCCACTTTGTTGGCCTCTTCTGGAACTACAGG

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00003008 False 429 lncRNA 0.46 2 1315289 1321953
TCONS_00003009 True 221 lncRNA 0.43 2 1315289 1342237

Neighbor


gene id symbol gene type direction distance location
XLOC_000029 CR450787.2 coding upstream 96484 1218691 ~ 1218805 (+)
XLOC_000028 NA coding upstream 281651 1015812 ~ 1033638 (+)
XLOC_000027 n6amt1 coding upstream 344338 961607 ~ 970951 (+)
XLOC_000026 NA coding upstream 403738 794976 ~ 911551 (+)
XLOC_000025 jam2a coding upstream 707042 594584 ~ 608247 (+)
XLOC_000031 NA coding downstream 16494 1358731 ~ 1360831 (+)
XLOC_000032 NA coding downstream 229610 1571847 ~ 1578251 (+)
XLOC_000033 urp2 coding downstream 257742 1599979 ~ 1614500 (+)
XLOC_000034 NA coding downstream 274966 1617203 ~ 1619314 (+)
XLOC_000035 atp1a1a.4 coding downstream 347538 1689775 ~ 1706159 (+)
XLOC_000024 dre-mir-155 non-coding upstream 738768 576444 ~ 576521 (+)
XLOC_000018 NA non-coding upstream 956727 355481 ~ 358562 (+)
XLOC_000043 NA non-coding downstream 659479 2001716 ~ 2005632 (+)
XLOC_000044 NA non-coding downstream 681172 2023409 ~ 2023645 (+)

Expression



Co-expression Network