G1128002


Basic Information

Item Value
gene id G1128002
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 93032020 ~ 93033194 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1283035
atgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccacgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccACGTACATAACACgtacataacaccatgtacataacatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacacGTACATAACACcatgtacataacaccatgtacataacaccatgtacataacacgtacataacaccatgtacataacacCatgtacataacaccatgtacataacacgtacataacaccatgtacataacaTGTACATTACACCATGTACATAACACgtacataacaccatgtacataacaTGTACATAACACCACGTACATAACATGTACATAACACCACGTACATAACACCACGTACATAACACgtacataacaccatgtacataaTGACAATAAAGTTGTAATATTTTCTTCATCACATTTTAATACCCTTCACTTCTGACCTGGATGAGAGTTTCAAAGGTATTGGAGCAGTTCAGAGGGAAGACTTTGGACACCATGGTGTATTCACTCTTGGCCAGGGACAAGAAGGCTGTGATGCAGGCCATGTAGGTCTCAATCTCAATGTGTAATATGCTGTCCCGCCCTAGTGACACAAGACAGGAGTGAA
>TU1283036
atgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccacgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccACGTACATAACACgtacataacaccatgtacataacatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacacGTACATAACACcatgtacataacacgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacatgtacataacaccatgtacataacaccatgtacataacaccaTGTACATTACACCATGTACATAACatgtacataacaccatgtacataacaccaTGTACATTACACCATGTACATAACACgtacataacaccatgtacataacaTGTACATAACACCACGTACATAACATGTACATAACACCACGTACATAACACCACGTACATAACACgtacataacaccatgtacataaTGACAATAAAGTTGTAATATTTTCTTCATCACATTTTAATACCCTTCACTTCTGACCTGGATGAGAGTTTCAAAGGTATTGGAGCAGTTCAGAGGGAAGACTTTGGACACCATGGTGTATTCACTCTTGGCCAGGGACAAGAAGGCTGTGATGCAGGCCATGTAGGTCTCAATCTCAATGTGTAATATGCTGTCCCGCCCTAGTGACACAAGACAGGAGTGAA
>TU1283037
atgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccacgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccACGTACATAACACgtacataacaccatgtacataacatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacacGTACATAACACgtacataacaccatgtacataacatgtacataacacgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacatgtacataacaccatgtacataacaccatgtacataacacCatgtacataacaccatgtacataacacgtacataacaccatgtacataacaTGTACATTACACCATGTACATAACACgtacataacaccatgtacataacaTGTACATAACACCACGTACATAACATGTACATAACACCACGTACATAACACCACGTACATAACACgtacataacaccatgtacataaTGACAATAAAGTTGTAATATTTTCTTCATCACATTTTAATACCCTTCACTTCTGACCTGGATGAGAGTTTCAAAGGTATTGGAGCAGTTCAGAGGGAAGACTTTGGACACCATGGTGTATTCACTCTTGGCCAGGGACAAGAAGGCTGTGATGCAGGCCATGTAGGTCTCAATCTCAATGTGTAATATGCTGTCCCGCCCTAGTGACACAAGACAGGAGTGAA
>TU1283039
atgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccacgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccACGTACATAACACgtacataacaccatgtacataacatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacacGTACATAACACcatgtacataacacgtacataacaccatgtacataacaccatgtacataacaccatgtacataacaccatgtacataacatgtacataacaccatgtacataacaccatgtacataacacgtacataacaccatgtacataacacgtacataacaccatgtacataacaccatgtacataacaccatgtacataacacGTACAGAACACCATGTACATAACATGTACATAACGCCAAgtaca

Function

NR:

description
PREDICTED: protein NLRC3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1283035 False 861 lncRNA 0.38 3 93032020 93033194
TU1283036 False 917 lncRNA 0.38 4 93032020 93033194
TU1283037 False 936 lncRNA 0.37 2 93032020 93033194
TU1283039 True 624 lncRNA 0.36 2 93032549 93033194
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110487425 LOC106606392 coding downstream 14014 93016163 ~ 93018006 (-)
LOC110487082 otop2 coding downstream 39939 92961669 ~ 92992081 (-)
LOC118937833 otop2 coding downstream 79302 92948575 ~ 92952718 (-)
LOC110487086 LOC106601910 coding downstream 154840 92873659 ~ 92877180 (-)
LOC110516409 LOC106594801 coding downstream 229875 92598880 ~ 92802145 (-)
LOC110487427 LOC106606390 coding upstream 10873 93044067 ~ 93099141 (-)
LOC118937781 LOC106606397 coding upstream 33486 93066680 ~ 93074303 (-)
LOC118937782 NA coding upstream 48471 93081665 ~ 93084620 (-)
LOC110487468 LOC106602060 coding upstream 74055 93107249 ~ 93140129 (-)
LOC110485276 LOC106606397 coding upstream 117274 93150468 ~ 93152962 (-)
G1128000 LOC106602066 non-coding downstream 2300 93029127 ~ 93029720 (-)
G1127999 NA non-coding downstream 3029 93026856 ~ 93028991 (-)
G1127995 NA non-coding downstream 13692 93018114 ~ 93018328 (-)
G1127991 NA non-coding downstream 26265 92998419 ~ 93005755 (-)
G1127992 NA non-coding downstream 30219 93000560 ~ 93001801 (-)
G1128004 NA non-coding upstream 2657 93035851 ~ 93036058 (-)
G1128022 NA non-coding upstream 55031 93088225 ~ 93169782 (-)
G1128030 LOC106602060 non-coding upstream 81312 93114506 ~ 93114959 (-)
G1128032 NA non-coding upstream 81940 93115134 ~ 93162598 (-)
G1128039 NA non-coding upstream 96575 93129769 ~ 93175028 (-)
G1127792 NA other downstream 177912 92850300 ~ 92854108 (-)
G1127739 NA other downstream 276888 92754879 ~ 92755132 (-)
G1127735 NA other downstream 283805 92747794 ~ 92748215 (-)
G1127726 NA other downstream 313553 92715049 ~ 92718467 (-)
LOC110487457 LOC106606216 other upstream 356908 93381051 ~ 93392268 (-)
G1128567 LOC106606382 other upstream 540871 93574065 ~ 93577988 (-)
G1128609 NA other upstream 656491 93689685 ~ 93690320 (-)
G1128616 NA other upstream 669801 93702995 ~ 93707636 (-)
p-ras LOC101485266 other upstream 682004 93715163 ~ 93725341 (-)

Expression

G1128002 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
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G1128002 Expression in each Bioproject

Bar chart with 3 bars.
G1128002 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
End of interactive chart.

Co-expression Network