G1129721


Basic Information

Item Value
gene id G1129721
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 95391712 ~ 95394822 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1285279
CAATTTGTCTGTGTGCAGGCCGAGTGTGCGAAACCTCTAAATGCTCCTATCTGGCAGGCCACGTTTGAAGGGTTAATATGAAGACGGCAGACAACCTTCATCCTTTTGTCACCCTGAGGAGATGGAAAAGTTATTGCTGTGAAGTTTCTGTTGTTCGGTGAGAAAATACTGAATGTGGCATTTGGATATTGGTGAGATTTCGTTGCTTTTAAGCAAGAATACTTTTGAAGTCTGTGAGGCAAAGCGGGATTCCTCATGGATAGCAATAGTGATAGACAGTACAATGATACAGCAAACCGTTCAACATGTAGAATCTACATACGAAGCCTGGGAGGCTACAGAAAGCTAAACAACACAAATAAAGCAGATTGCATTTTCATTGGTTTATTCATACACAGTATCCTTTATACCCCAGTTAGCGAAGGGACATGGGAGAACCTGACAAACAAAAGCAAGGAGAGTGAAATGAAAATAAAGCATACAAAACATCCCTGTGTTGTGGTCCCATGATCGCCACGGTGATTCAAATAATGACTGCAAGTGATTGTAGTTCCTCCTGAAAGTACATACTGCTGGGAGGTTTTGTGTCTATAGTAGCCCAAACACCGCCCACTCACTAGACATAGATTCTCAATGTGAGACGTCATTCACAGGGCTAACTAAGGTTAGCCTCTCTTTCCCACTAGTATCTGATAAGTTCTATAGAGAGTGCTATATTCTCCATGTAGAAACCTCCACATCTCTGAAGTAAAACATAATATCTAGATGGACAGACAAGATCCTGACTCAATGAAATACTTCTCAGTTTGTCTCATCAGCAATGTTGTGTAAACATATGGTTCCCCTTATTTCTAATAGGTCCATTTGGTCCAGATGGGACACTTTAATACTAAAATGGAATCAAAGTTACATGTTAACATCATTTCAGTAGTCATCCCCATTGAACAGCTACATTTCAAGGACATGCTACAAATACTTTTGTCTAACAGAAACGGACTAAATGCAAGACATTTGGCAATAGGCTGAAACGCCAAAACAACTGTGTCTTTGTGGTCAGGGTGTATTACACAATAGACCAACGTTTCTTTATTCTTTGGCAGTTCAGTTGTGTCTGATTGAACTTCCTGTGCTTGTTCTGTGTTGATCTCTCATTATGTAGGTTCACAGTCTGGCACAGAAAGAGATCTTCTACATAACCACAACCAAAACAGAAGAGACAGAAAATTCAAATCGTTGTGTCCATGGCTTAGATGTGAGTTCTGACTGAATTTAGAACTTGGTTGAGTCAGGAGACTGAACACTAAGACAAACCAATAAACAaatggagaagaggagaacagaaagaggagagaagtgtAGTGGGAGGGGCTAGCGGGACAGGCGTGTGTCTCACTGTGATGCTTGGTGACACATGAACTTCATACTGTACACCTGGGGATCTGTGTTAACATGCATCATGCCTTCTCTCATGCTTAGATCAGGCCTTACCCTCACATGCACACAGCGAAAGCCAGAAAACACACTTCTGCCAAGGCTAGGAGTAGGAGTGTATTCAACCAGGGACCACGCGCCACAGtcacacatactgtagatactgcaTATCGTCTGTGAAACATTAAAGGTAGAGTCAGCGATATGACCAAGATGCACAAAGTAAACGGCATAGTGGGTCAATCTCCGCAACACACTGAGAGTGCGGGTCAGTTTTGGTCCAGTGCCTACTACTCTGTAAGCGCGTGAAGGGAACCCATGTACAGATACTGTGGGTGACTTTGTGAGAGTGAAGTCTTGAGTCTTGCTCATCGCAATTTCTCGCAATCGCAATGCTTTTTGTGCAAAGGTCATTTCTCTGACTCTACCTTTAAAATAGTCAAAAACAAACTGTGGATAAATAGAGAAAATACATATTACAAGGTTTCGCTGATAACAAAGCTACCAAAGATTCAGCCAAACGTCATGTGTTTTTGGGATAGTCATCTAAACAGAGATGTTTAACCCGTCTAAGGTAGTAAAAGCACATTCAGTTCGTGGTATAAAATCTGCGAGTCATTTCTCTTTTTGAAAAAGCTCTTTCGATATCTACAAAATGGTCGACAAATAGGGTAAACAATGTTCTCTCTGGACAGAAAAGTATAGAGGGAAACATACGGAATATGTTTAATAAGTAACAAGTCTCTGAATCTCATTCAGCTTTTCAGTGGGGTAGGACTTTCATACAGACAACAATGAATGAATCAACAGATATCATAATACTT
>TU1285277
GGTTTATTCATACACAGTATCCTTTATACCCCAGTTAGCGAAGGGACATGGGAGAACCTGACAAACAAAAGCAAGGAGAGTGAAATGAAAATAAAGCATACAAAACATCCCTGTGTTGTGGTCCCATGATCGCCACGGTGATTCAAATAATGACTGCAAGTGATTGTAGTTCCTCCTGAAAGTACATACTGCTGGGAGGTTTTGTGTCTATAGTAGCCCAAACACCGCCCACTCACTAGACATAGATTCTCAATGTGAGACGTCATTCACAGGGCTAACTAAGGTTAGCCTCTCTTTCCCACTAGTATCTGATAAGTTCTATAGAGAGTGCTATATTCTCCATGTAGAAACCTCCACATCTCTGAAGTAAAACATAATATCTAGATGGACAGACAAGATCCTGACTCAATGAAATACTTCTCAGTTTGTCTCATCAGCAATGTTGTGTAAACATATGGTTCCCCTTATTTCTAATAGGTCCATTTGGTCCAGATGGGACACTTTAATACTAAAATGGAATCAAAGTTACATGTTAACATCATTTCAGTAGTCATCCCCATTGAACAGCTACATTTCAAGGACATGCTACAAATACTTTTGTCTAACAGAAACGGACTAAATGCAAGACATTTGGCAATAGGCTGAAACGCCAAAACAACTGTGTCTTTGTGGTCAGGGTGTATTACACAATAGACCAACGTTTCTTTATTCTTTGGCAGTTCAGTTGTGTCTGATTGAACTTCCTGTGCTTGTTCTGTGTTGATCTCTCATTATGTAGGTTCACAGTCTGGCACAGAAAGAGATCTTCTACATAACCACAACCAAAACAGAAGAGACAGAAAATTCAAATCGTTGTGTCCATGGCTTAGATGTGAGTTCTGACTGAATTTAGAACTTGGTTGAGTCAGGAGACTGAACACTAAGACAAACCAATAAACAaatggagaagaggagaacagaaagaggagagaagtgtAGTGGGAGGGGCTAGCGGGACAGGCGTGTGTCTCACTGTGATGCTTGGTGACACATGAACTTCATACTGTACACCTGGGGATCTGTGTTAACATGCATCATGCCTTCTCTCATGCTTAGATCAGGCCTTACCCTCACATGCACACAGCGAAAGCCAGAAAACACACTTCTGCCAAGGCTAGGAGTAGGAGTGTATTCAACCAGGGACCACGCGCCACAGtcacacatactgtagatactgcaTATCGTCTGTGAAACATTAAAGGTAGAGTCAGCGATATGACCAAGATGCACAAAGTAAACGGCATAGTGGGTCAATCTCCGCAACACACTGAGAGTGCGGGTCAGTTTTGGTCCAGTGCCTACTACTCTGTAAGCGCGTGAAGGGAACCCATGTACAGATACTGTGGGTGACTTTGTGAGAGTGAAGTCTTGAGTCTTGCTCATCGCAATTTCTCGCAATCGCAATGCTTTTTGTGCAAAGGTCATTTCTCTGACTCTACCTTTAAAATAGTCAAAAACAAACTGTGGATAAATAGAGAAAATACATATTACAAGGTTTCGCTGATAACAAAGCTACCAAAGATTCAGCCAAACGTCATGTGTTTTTGGGATAGTCATCTAAACAGAGATGTTTAACCCGTCTAAGGTAGTAAAAGCACATTCAGTTCGTGGTATAAAATCTGCGAGTCATTTCTCTTTTTGAAAAAGCTCTTTCGATATCTACAAAATGGTCGACAAATAGGGTAAACAATGTTCTCTCTGGACAGAAAAGTATAGAGGGAAACATACGGAATATGTTTAATAAGTAACAAGTCTCTGAATCTCATTCAGCTTTTCAGTGGGGTAGGACTTTCATACAGACAACAATGAATGAATCAACAGATATCATAATACTTGGTTTTACAATGATAAGAATCAGACGTGTGCTGCATCCCCTAGAAAGTCATCTAGCGCTTTTTCATAATCAGGAAATAAGCATGCAACCGAGAACTGCATTGTGCATATGGAAAGAGCATTTTCAGTAGGAAAATCAAAACATCGTCTTCTCATGAACCTCAGTTCAAGATTTTTCCCCATAAATAGAAGTCCGGAATACCAAGTTACATGTTGTTGCAAACCTTATGAACAGAACCATATCCTCAATTCAGTCTTGCTCATTAATTCTCCTAAATAACTCTGAGAAAATTGGTACCGGTGCTTTCACCAAAAATAAAATCTTTAAAAGTTCATCATTGTTTCATCAGTCAACTGTTCATACGGACCTAAAAGCTGTTCTTTAACAACATACTAGGTTAGACACAGCTATACTTGGTGGGTTACATTTTAGTAACGTTTTGTAAACGTTTGATAGCGGTTTGTAAACGTTCGGTAACGGTTTGGAGTATTTTAATAAAACTGCCAGCGAAACACTGTGTTGAGCTTAGTTTAGCGTGCTGACACCATCAGAAGGGTTGACGGCTTCACCACAAGGAAAGACATCATAGTTGACTATAGGAATTTCGTAAGAAAAGGACGCTGTAGATAGTAGATGTTTATATAGATATGTACTGGAATAAAATGATTTGTTTCACCTCTATTTTGGCACTCGTGTAACAGTAGATAATAGACCTCTCTTCTCTGTAGGTATATAAATATAATCTAGAATGTGGTGTAGCAGACTGTTTAGAAatggcagtacagtacagtaagtacaacagagagaggaaaggtagGGACAGGAGGGTATGTTCCATCATGCTTCATAGGGAGGGA
>TU1285278
GGTTTATTCATACACAGTATCCTTTATACCCCAGTTAGCGAAGGGACATGGGAGAACCTGACAAACAAAAGCAAGGAGAGTGAAATGAAAATAAAGCATACAAAACATCCCTGTGTTGTGGTCCCATGATCGCCACGGTGATTCAAATAATGACTGCAAGTGATTGTAGTTCCTCCTGAAAGTACATACTGCTGGGAGGTTTTGTGTCTATAGTAGCCCAAACACCGCCCACTCACTAGACATAGATTCTCAATGTGAGACGTCATTCACAGGGCTAACTAAGGTTAGCCTCTCTTTCCCACTAGTATCTGATAAGTTCTATAGAGAGTGCTATATTCTCCATGTAGAAACCTCCACATCTCTGAAGTAAAACATAATATCTAGATGGACAGACAAGATCCTGACTCAATGAAATACTTCTCAGTTTGTCTCATCAGCAATGTTGTGTAAACATATGGTTCCCCTTATTTCTAATAGGTCCATTTGGTCCAGATGGGACACTTTAATACTAAAATGGAATCAAAGTTACATGTTAACATCATTTCAGTAGTCATCCCCATTGAACAGCTACATTTCAAGGACATGCTACAAATACTTTTGTCTAACAGAAACGGACTAAATGCAAGACATTTGGCAATAGGCTGAAACGCCAAAACAACTGTGTCTTTGTGGTCAGGGTGTATTACACAATAGACCAACGTTTCTTTATTCTTTGGCAGTTCAGTTGTGTCTGATTGAACTTCCTGTGCTTGTTCTGTGTTGATCTCTCATTATGTAGGTTCACAGTCTGGCACAGAAAGAGATCTTCTACATAACCACAACCAAAACAGAAGAGACAGAAAATTCAAATCGTTGTGTCCATGGCTTAGATGTGAGTTCTGACTGAATTTAGAACTTGGTTGAGTCAGGAGACTGAACACTAAGACAAACCAATAAACAaatggagaagaggagaacagaaagaggagagaagtgtAGTGGGAGGGGCTAGCGGGACAGGCGTGTGTCTCACTGTGATGCTTGGTGACACATGAACTTCATACTGTACACCTGGGGATCTGTGTTAACATGCATCATGCCTTCTCTCATGCTTAGATCAGGCCTTACCCTCACATGCACACAGCGAAAGCCAGAAAACACACTTCTGCCAAGGCTAGGAGTAGGAGTGTATTCAACCAGGGACCACGCGCCACAGtcacacatactgtagatactgcaTATCGTCTGTGAAACATTAAAGGTAGAGTCAGCGATATGACCAAGATGCACAAAGTAAACGGCATAGTGGGTCAATCTCCGCAACACACTGAGAGTGCGGGTCAGTTTTGGTCCAGTGCCTACTACTCTGTAAGCGCGTGAAGGGAACCCATGTACAGATACTGTGGGTGACTTTGTGAGAGTGAAGTCTTGAGTCTTGCTCATCGCAATTTCTCGCAATCGCAATGCTTTTTGTGCAAAGGTCATTTCTCTGACTCTACCTTTAAAATAGTCAAAAACAAACTGTGGATAAATAGAGAAAATACATATTACAAGGTTTCGCTGATAACAAAGCTACCAAAGATTCAGCCAAACGTCATGTGTTTTTGGGATAGTCATCTAAACAGAGATGTTTAACCCGTCTAAGGTAGTAAAAGCACATTCAGTTCGTGGTATAAAATCTGCGAGTCATTTCTCTTTTTGAAAAAGCTCTTTCGATATCTACAAAATGGTCGACAAATAGGGTAAACAATGTTCTCTCTGGACAGAAAAGTATAGAGGGAAACATACGGAATATGTTTAATAAGTAACAAGTCTCTGAATCTCATTCAGCTTTTCAGTGGGGTAGGACTTTCATACAGACAACAATGAATGAATCAACAGATATCATAATACTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1285279 False 2255 lncRNA 0.41 1 95391712 95393966
TU1285277 False 2730 lncRNA 0.40 1 95392093 95394822
TU1285278 True 1874 lncRNA 0.41 1 95392093 95393966

Neighbor

gene id symbol gene type direction distance location
LOC110486798 LOC105026136 coding upstream 14334 95327588 ~ 95377378 (+)
LOC110538757 NA coding upstream 79444 95310182 ~ 95312268 (+)
LOC110513898 LOC106601743 coding upstream 91182 95295161 ~ 95300530 (+)
LOC110538753 LOC106606737 coding upstream 109442 95278455 ~ 95286705 (+)
LOC110516622 LOC105012861 coding upstream 159673 94934381 ~ 95232039 (+)
LOC110538762 NA coding downstream 218112 95612934 ~ 95618161 (+)
LOC110538761 LOC106606716 coding downstream 234672 95629494 ~ 95815227 (+)
LOC110486806 LOC106606638 coding downstream 429060 95823882 ~ 95848439 (+)
LOC110539033 LOC106599243 coding downstream 560133 95954955 ~ 95994774 (+)
LOC110538768 ern1 coding downstream 601897 95996719 ~ 96026801 (+)
G1129655 NA non-coding upstream 19771 95371726 ~ 95371941 (+)
G1129455 NA non-coding upstream 258585 95132245 ~ 95133127 (+)
G1129448 NA non-coding upstream 290548 95099195 ~ 95101164 (+)
G1129737 NA non-coding downstream 21854 95416676 ~ 95416914 (+)
G1129739 NA non-coding downstream 25201 95420023 ~ 95420317 (+)
G1129742 NA non-coding downstream 30973 95425795 ~ 95426066 (+)
G1129747 NA non-coding downstream 43407 95438229 ~ 95438442 (+)
G1129750 NA non-coding downstream 47259 95442081 ~ 95442489 (+)
G1129613 LOC106601744 other upstream 82015 95300784 ~ 95309697 (+)
G1129601 LOC106601741 other upstream 124656 95266518 ~ 95267056 (+)
G1129591 LOC106601742 other upstream 138389 95252420 ~ 95253323 (+)
G1129576 NA other upstream 196432 95194386 ~ 95195280 (+)
G1129772 NA other downstream 124356 95519178 ~ 95519642 (+)
G1130570 alg1 other downstream 1223434 96618256 ~ 96633452 (+)
LOC118937804 LOC106591169 other downstream 1283710 96676774 ~ 96702725 (+)
G1130780 LOC106606334 other downstream 1767440 97162262 ~ 97163079 (+)

Expression


Co-expression Network