G1130112


Basic Information

Item Value
gene id G1130112
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 95751145 ~ 95758602 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1285708
GCCAGCTAGATACACAGGGTTAACcaacacacagactgacacataGGAAGACTCtgattatctctccctctctgtctgggttTTACCACGGCTGGTCTCGGTGAAGGAGAGAGCAGTGGATGAGACTGGAGCAGAAGAAAAGGGTGGAAGTGGAGGAGTGTGAGGAAAGGACAcacacatggcacacacacacacaagcacacatacagatacacacaagCATGCATACAAATGTGCACGCCACTCAggtatgcacacacacccacacacacacacacagccctctgcATCAGCTACATAACAGTCATCCGTTCCCTGCTCAAGGTCTGAGTAACCATGGGTAACCACTAACCATCCACCACTAGCAATATTCCATGATCAAGAGTTAGTTCCCTTCATGTTCAATTCTCTATCAGCTGTAGAAGGGAACGAGGTCAACTCCAGTAAACGCTAGACTAGCCTACCTTATAAGGTATACTTAGGGCCAGTCCTTTTCCCTCACCACCAAACCTAGTACGGAAATAGCCTATAGGGACAGAGTTTTGCCTGGTCAGAGTATAGCCTGGTACCAGATGTTTGTGCTGTCTTTCCCACCTCCTACAGTCACTGGCAAGACGACACaaacaaatctgggaccaggctagccaGAGTAtttactactctgtctgaacatatcaaactaaccatccattcacctccactaaaacaccaccgtaccagaatatatactactctgtctgaacatatcagactaaccatccattcacctccactaaaacaccaccgtaccagaatatatactactctgtctgaacatatcagactaaccatccattcacctccactaaaacaccgtaccagaatatatactactctgtctgaacatatcaaactaaccatccattcacctccactaaaacacccccgtaccagaatatatactactctgtctgaacatatcaaactaaccatccattcacctccactaaaacacccctgtaccagaatatatactactctgtctgaacatatcaaactaaccatccattcacctccactaaaacaccaccgtaccagaatatatactactctgtctgaacatatcagactaaccatccattcacctccactaaaacaccaccgtaccagaatatatactactctgtctgaacatatcaaactaaccatccattcacctccactaaaacaccgtaccagaatatatactactctgtctgaacatatcaaactaaccatccattcacctccactaaaacaccgtaccagaatatatactactctgtctgaacatatcagactaaccatccattcacctccactaaaacacccccgtaccagaatatatactactctgtctgaacatatcagactaaccatccattcacctccactaaaacaccgtaccagaatatatactactctgtctgaacatatcagactaaccatccattcacctccactaaaacaccaccgtaccagagtatatactactctgtctgaacatatcaaactaaccatccattcacctccactaaaacaccaccgtaccagaatatatactactctgtctgaacatatcaaactaaccatccattcacctccactaaaacaccgtaccagaatatatactactctgtctgaacatatcaaactaaccatccattcacctccactaaaacaccaccgtaccagaatatatactactctgtctgaacatatcaaactaaccatccattcacctccactaaaacaccaccgtaccagaatatatactactctgtctgaacatatcagactaaccatccattcacctccactaaaacacccccgtaccagaatatatactactctgtctgaacatatcaaactaaccatccattcacctccactaaaacaccaccgtaccagaatatatactactctgtctgaacatatcaaactaaccatccattcacctccactaaaacaccgtaccagaatatatactactctgtctgaacatatcaaactaaccatccattcacctccactaaaacaccaccgtaccagaatatatactactctgtctgaacatatcagactaaccatccattcacctccactaaaacacccccgtaccagaatatatactactctgtctgaacatatcaaactaaccatccattcacctccactaaaacaccgtaccagaatatatactactctgtctgaacatatcaaactaaccatccattcacctccactaaaacaccgtaccagaatatatactactctgtctgaacatatcagactaaccatccattcacctccactaaaacaccaccgtaccagaatatatactactctgtctgaacatatcaaactaaccatccattcacctccactaaaacaccaccgtaccagaatatatactactctgtctgaacatatcagactaaccatccattcacctccactaaaacaccaccgtaccagaatatatactactctgtctgaacatatcagactaaccatccattcacctccactaaaacacccccgtaccagaatatatactactctgtctgaacatatcagactaaccatccattcacctccactaaaacaccaccgtaccagaatatatactactctgtctgaacatatcagactaaccatccattcacctccactaaaacaccaccgtaccagaatatatactactctgtctgaacatatcagactaaccatccattcacctccactaaaacacccccgtaccagaatatatactactctgtctgaacatatcaaactaaccatccattcacctccactaaaacaccaccgtaccagaatatatactactctgtctgaacatatcaaactaaccatccattcacctccactaaaacaccaccgtaccagaatatatactactctgtctgaacatatcagactaaccatccattcacctccactaaaacaccaccgtaccagaatatatactactctgtctgaacatatcaaactaaccatccattcacctccactaaaacaccaccgtaccagaatatatactactctgtctgaacatatcaaactaaccatccattcacctccactaaaacaccgtaccagaatatatactactctgtctgaacatatcagactaaccatccattcacctccactaaaacaccaccgtaccagaatatatactactctgtctgaacatatcaaactaaccatccattcacctccactaaaacacccccgtaccagaatatatactactctgtctgaacatatcaaactaaccatccattcacctccactaaaacaccaccgtaccagaatatatac
>TU1285707
GCCAGCTAGATACACAGGGTTAACcaacacacagactgacacataGGAAGACTCtgattatctctccctctctgtctgggttTTACCACGGCTGGTCTCGGTGAAGGAGAGAGCAGTGGATGAGACTGGAGCAGAAGAAAAGGGTGGAAGTGGAGGAGTGTGAGGAAAGGACAcacacatggcacacacacacacaagcacacatacagatacacacaagCATGCATACAAATGTGCACGCCACTCAggtatgcacacacacccacacacacacacacagccctctgcATCAGCTACATAACAGTCATCCGTTCCCTGCTCAAGGTCTGAGTAACCATGGGTAACCACTAACCATCCACCACTAGCAATATTCCATGATCAAGAGTTAGTTCCCTTCATGTTCAATTCTCTATCAGCTGTAGAAGGGAACGAGGTCAACTCCAGTAAACGCTAGACTAGCCTACCTTATAAGGTATACTTAGGGCCAGTCCTTTTCCCTCACCACCAAACCTAGTACGGAAATAGCCTATAGGGACAGAGTTTTGCCTGGTCAGAGTATAGCCTGGTACCAGATGTTTGTGCTGTCTTTCCCACCTCCTACAGTCACTGGCAAGACGACACaaacaaatctgggaccaggctagccaGAGTAtttactactctgtctgaacatatcaaactaaccatccattcacctccactaaaacaccaccgtaccagaatatatactactctgtctgaacatatcagactaaccatccattcacctccactaaaacaccaccgtaccagaatatatactactctgtctgaacatatcagactaaccatccattcacctccactaaaacaccgtaccagaatatatactactctgtctgaacatatcaaactaaccatccattcacctccactaaaacacccccgtaccagaatatatactactctgtctgaacatatcaaactaaccatccattcacctccactaaaacacccctgtaccagaatatatactactctgtctgaacatatcaaactaaccatccattcacctccactaaaacaccaccgtaccagaatatatactactctgtctgaacatatcagactaaccatccattcacctccactaaaacaccaccgtaccagaatatatactactctgtctgaacatatcaaactaaccatccattcacctccactaaaacaccgtaccagaatatatactactctgtctgaacatatcaaactaaccatccattcacctccactaaaacaccgtaccagaatatatactactctgtctgaacatatcagactaaccatccattcacctccactaaaacacccccgtaccagaatatatactactctgtctgaacatatcagactaaccatccattcacctccactaaaacaccgtaccagaatatatactactctgtctgaacatatcagactaaccatccattcacctccactaaaacaccaccgtaccagaatatatactactctgtctgaacatatcaaactaaccatccattcacctccactaaaacaccgtaccagaatatatactactctgtctgaacatatcagactaaccatccattcacctccactaaaacacccccgtaccagaatatatactactctgtctgaacatatcaaactaaccatccattcacctccactaaaacaccaccgtaccagaatatatactactctgtctgaacatatcagactaaccatccattcacctccactaaaacacccccgtaccagaatatatactactctgtctgaacatatcaaactaaccatccattcacctccactaaaacaccaccgtaccagaatatatactactctgtctgaacatatcagactaaccatccattcacctccactaaaacacccccgtaccagaatatatactactctgtctgaacatatcagactaaccatccattcacctccactaaaacaccaccgtaccagaatatatactactctgtctgaacatatcaaactaaccatccattcacctccactaaaacaccaccgtaccagaatatatactactctgtctgaacatatcaaactaaccatccattcacctccactaaaacaccaccgtaccagaatatatactactctgtctgaacatatcagactaaccatccattcacctccactaaaacaccgtaccagaatatatactactctgtctgaacatatcaaactaaccatccattcacctccactaaaacaccgtaccagaatatatactactctgtctgaacatatcagactaaccatccattcacctccactaaaacaccaccgtaccagaatatatactactctgtctgaacatatcaaactaaccatccattcacctccactaaaacacccccgtaccagaatatatactactctgtctgaacatatcagactaaccatccattcacctccactaaaacacccccgtaccagaatatatactactctgtctgaacatatcaaactaaccatccattcacctccactaaaacacccccgtaccagaatatatactactctgtctgaacatatcagactaaccatccattcacctccactaaaacacccccgtaccagaatatatactactctgtctgaacatatcagactaaccatccattcacctccactaaaacaccaccgtaccagaatatatactactctgtctgaacatatcagactaaccatccattcacctccactaaaacaccaccgtaccagaatatatactactctgtctgaacatatcagactaaccatccattcacctccactaaaacaccaccgtaccagaatatatactactctgtctgaacatatcagactaaccatccattcacctccactaaaacaccgtaccagaatatatactactctgtctgaacatatcagactaaccatccattcacctccactaaaacacccccgtaccagaatatatactactctgtctgaacatatcagactaaccatccattcacctccactaaaacaccaccgtaccagaatatatactactctgtctgaacatatcaaactaaccatccattcacctccactaaaacaccaccgtaccagaatatatactactctgtctgaacatatcagactaaccatccattcacctccactaaaacaccaccgtaccagaatatatactactctgtctgaacatatcaaactaaccatccattcacctccactaaaacaccgtaccagaatatatactactctgtctgaacatatcaaactaaccatccattcacctccactaaaacaccaccgtaccagaatatatactactctgtctgaacatatcaaactaaccatccattcacctccactaaaacaccgtaccagaatatatactactctgtctgaacatatcagactaaccatccattcacctccactaaaacacccccgtaccagaatatatactactctgtctgaacatatcagactaaccatccattcacctccactaaaacaccgtaccagaatatatactactctgtctgaacatatcagactaaccatccattcacctccactaaaacacccccgtaccagaatatatactactctgtctgaacatatcagactaaccatccattcacctccactaaaacaccgtaccagaatatatactactctgtctgaacatatcaaactaaccatccattcacctccactaaaacaccaccgtaccagaatatatactactctgtctgaacatatcaaactaaccatccattcacctccactaaaacaccaccgtaccagaatata

Function

NR:

description
uncharacterized protein LOC110539031

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1285708 False 3366 lncRNA 0.41 3 95751145 95758602
TU1285707 True 3858 lncRNA 0.41 2 95754631 95758602

Neighbor

gene id symbol gene type direction distance location
LOC110486837 LOC105026133 coding downstream 130007 95395260 ~ 95621138 (-)
LOC118937798 LOC106606721 coding downstream 362664 95380385 ~ 95388481 (-)
LOC110538756 LOC108245165 coding downstream 441382 95300960 ~ 95309763 (-)
LOC118936310 LOC106601672 coding downstream 455037 95287208 ~ 95296108 (-)
LOC110538752 LOC106606738 coding downstream 473051 95269361 ~ 95278094 (-)
LOC110538778 NA coding upstream 236643 95995245 ~ 95996642 (-)
LOC118937923 NA coding upstream 236787 95995389 ~ 95995530 (-)
LOC118937801 NA coding upstream 547266 96209246 ~ 96313547 (-)
LOC118937802 fbxl16 coding upstream 555724 96314326 ~ 96365986 (-)
LOC110516715 LOC103469064 coding upstream 633637 96392239 ~ 96435793 (-)
G1130075 NA non-coding downstream 71097 95674836 ~ 95680048 (-)
G1130074 NA non-coding downstream 76992 95673895 ~ 95674153 (-)
G1130059 NA non-coding downstream 107132 95643731 ~ 95644013 (-)
G1130058 NA non-coding downstream 107838 95643105 ~ 95643307 (-)
G1130054 NA non-coding downstream 116441 95634387 ~ 95634704 (-)
G1130137 NA non-coding upstream 64845 95823447 ~ 95823755 (-)
G1130145 NA non-coding upstream 86505 95845107 ~ 95846283 (-)
G1130146 NA non-coding upstream 88536 95847138 ~ 95848920 (-)
G1130151 NA non-coding upstream 114317 95872919 ~ 95873441 (-)
G1130155 NA non-coding upstream 134712 95893314 ~ 95896542 (-)
G1130049 NA other downstream 124980 95625758 ~ 95626165 (-)
G1129951 NA other downstream 357178 95392201 ~ 95393967 (-)
G1129544 NA other downstream 658052 95092622 ~ 95093093 (-)
LOC110511881 LOC106606292 other downstream 1292947 94450540 ~ 94464106 (-)
G1128822 LOC106606284 other downstream 1475963 94274562 ~ 94275182 (-)
G1130893 NA other upstream 943805 96701694 ~ 96705588 (-)
LOC110518479 LOC106591170 other upstream 956189 96714290 ~ 96728931 (-)
LOC110487147 LOC106601974 other upstream 1103541 96858442 ~ 96867462 (-)

Expression


Co-expression Network