G1130305


Basic Information

Item Value
gene id G1130305
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 96305868 ~ 96307122 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1285951
TTTAGTTTTGTACAACTTTTACTAAAACGGTGCAGACTGGAACCAAATACCGTGTCAAAAAACAACAACTGCTCTCTGACAAGGCACTGCAGCCATCCTTCAGAATCACCACACCTCTTTCTCTCCCGTCCCAATCAAATCCATTAGAATCACCACACCTCTTTCTCTCCGGCCCAATCAAATCATTTAGATTCACCACACCACTTTCTCTCCTGTCCAATCAAATCCTTTAGATTCACCACACCACTTTCTCTCCCGTCCAATCAAATCCTTTAGATTCACCACACCACATTCTCTCCCGTCCAATCAAATCCATTAGATTCACCACACCGCTTTCTCTCCCGTCCAATCAAATCCATTAGATTCACCACACCGCTTTCTCTCCCGTccaatcaaatgtttcatatcaTCACCACAGTATCAGTATTTACACAAAAACAAAATGAGCAAAACATAATAAAAGAAGAAACAAACCCTCAAAAAAACACATCTCCATATGACCTCTGTGTCACaaataataaacagagagatacCAAAATAGTACCCATTATATAGGAATGTAGGTAAGGGAGTGTGGCAGACAGACAAGAGGTGTAGAGTACAGTCGTCCCTAAGAGTAACATGAGCCTGTAAAAGACCAGTGTCCCTCCCAGGCCACCGTACCGCCGTATCGGGCAGATCACTGTAAAAGCTGCATAGCCGAGAGCTCTCTATGGATGGAATCCCGGGCCCTAAATACCCCATAGACCAGTGTCCCTCCCAGGCCACCATACCGTATCGGGCAGATCACTGTAAACTCAGTTTAAACTGTAAACTCAGTTTAAACTGAAACAGTTGAACCAATGGAGACCTGGATAGAAGTCACATGTTCAGTCATCAACTGTTTTCCCTCCATAGACCTTCTGAAAAGCATGTTTCTGTCCTGTCTTCAGATGCTCTACGTAACAGACCAGTGTCCCTCCCAGTTGTTGACAGTGTTCTGGAGACTGATGTGTTTTAACCCTCTGAACATGTTCCTCTTGTGTCAATCAGAAGGACTTACAACATACTTttattgttataattattatACAGTGTCTTATTCATCAGTACAGAGTTTTAACCTGTTGGGTTGGTCACCATGtgggaaaaaaatacattgaaCATATCCCTGGACTCTTCCTCTGttagacagaaggagagagagggggagagagggagagggagagggag
>TU1285952
TTTAGTTTTGTACAACTTTTACTAAAACGGTGCAGACTGGAACCAAATACCGTGTCAAAAAACAACAACTGCTCTCTGACAAGGCACTGCAGCCATCCTTCAGAATCACCACACCTCTTTCTCTCCCGTCCCAATCAAATCCATTAGAATCACCACACCTCTTTCTCTCCGGCCCAATCAAATCATTTAGATTCACCACACCACTTTCTCTCCTGTCCAATCAAATCCTTTAGATTCACCACACCACTTTCTCTCCCGTCCAATCAAATCCATTAGATTCACCACACCGCTTTCTCTCCCGTCCAATCAAATCCATTAGATTCACCACACCGCTTTCTCTCCCGTccaatcaaatgtttcatatcaTCACCACAGTATCAGTATTTACACAAAAACAAAATGAGCAAAACATAATAAAAGAAGAAACAAACCCTCAAAAAAACACATCTCCATATGACCTCTGTGTCACaaataataaacagagagatacCAAAATAGTACCCATTATATAGGAATGTAGGTAAGGGAGTGTGGCAGACAGACAAGAGGTGTAGAGTACAGTCGTCCCTAAGAGTAACATGAGCCTGTAAAAGACCAGTGTCCCTCCCAGGCCACCGTACCGCCGTATCGGGCAGATCACTGTAAAAGCTGCATAGCCGAGAGCTCTCTATGGATGGAATCCCGGGCCCTAAATACCCCATAGACCAGTGTCCCTCCCAGGCCACCATACCGTATCGGGCAGATCACTGTAAACTCAGTTTAAACTGTAAACTCAGTTTAAACTGAAACAGTTGAACCAATGGAGACCTGGATAGAAGTCACATGTTCAGTCATCAACTGTTTTCCCTCCATAGACCTTCTGAAAAGCATGTTTCTGTCCTGTCTTCAGATGCTCTACGTAACAGACCAGTGTCCCTCCCAGTTGTTGACAGTGTTCTGGAGACTGATGTGTTTTAACCCTCTGAACATGTTCCTCTTGTGTCAATCAGAAGGACTTACAACATACTTttattgttataattattatACAGTGTCTTATTCATCAGTACAGAGTTTTAACCTGTTGGGTTGGTCACCATGtgggaaaaaaatacattgaaCATATCCCTGGACTCTTCCTCTGttagacagaaggagagagagggggagagagggagagggagagggag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1285951 False 1212 lncRNA 0.43 2 96305868 96307122
TU1285952 True 1169 lncRNA 0.43 2 96305868 96307122

Neighbor

gene id symbol gene type direction distance location
LOC118937800 LOC106606337 coding upstream 4529 96221848 ~ 96301339 (+)
tbc1d16 LOC106606686 coding upstream 140474 96139773 ~ 96165394 (+)
LOC110539035 LOC106588841 coding upstream 166832 96124942 ~ 96139036 (+)
LOC110538773 LOC106606683 coding upstream 189310 96103366 ~ 96116558 (+)
LOC110538781 LOC106595186 coding upstream 225316 96072905 ~ 96080552 (+)
LOC110517345 LOC106596483 coding downstream 235748 96542870 ~ 96594168 (+)
LOC110512418 alg1 coding downstream 311117 96618239 ~ 96633339 (+)
LOC118937803 NA coding downstream 319986 96627108 ~ 96630599 (+)
LOC110494405 pigq coding downstream 330076 96637198 ~ 96670446 (+)
LOC110494408 NA coding downstream 364343 96671465 ~ 96672625 (+)
G1130304 NA non-coding upstream 331 96301829 ~ 96305537 (+)
G1130341 NA non-coding upstream 54236 96247331 ~ 96251632 (+)
G1130342 NA non-coding upstream 54693 96250849 ~ 96251175 (+)
G1130337 NA non-coding upstream 70729 96233995 ~ 96235139 (+)
G1130326 NA non-coding upstream 98658 96204776 ~ 96207210 (+)
G1130370 NA non-coding downstream 59921 96367043 ~ 96367312 (+)
G1130374 NA non-coding downstream 68304 96375426 ~ 96375679 (+)
G1130376 NA non-coding downstream 73466 96380588 ~ 96380801 (+)
G1130379 NA non-coding downstream 78284 96385406 ~ 96385663 (+)
G1130380 NA non-coding downstream 78923 96386045 ~ 96387103 (+)
LOC110538761 LOC106606716 other upstream 675293 95629494 ~ 95815227 (+)
G1129772 NA other upstream 786226 95519178 ~ 95519642 (+)
G1129613 LOC106601744 other upstream 996171 95300784 ~ 95309697 (+)
G1129601 LOC106601741 other upstream 1038812 95266518 ~ 95267056 (+)
G1129591 LOC106601742 other upstream 1052545 95252420 ~ 95253323 (+)
G1130570 alg1 other downstream 311134 96618256 ~ 96633452 (+)
LOC118937804 LOC106591169 other downstream 371410 96676774 ~ 96702725 (+)
G1130780 LOC106606334 other downstream 855140 97162262 ~ 97163079 (+)
G1131438 NA other downstream 1513602 97820724 ~ 97822057 (+)
LOC118936514 smim22 other downstream 1952887 98259570 ~ 98268855 (+)

Expression


Co-expression Network