G1130380


Basic Information

Item Value
gene id G1130380
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 96386045 ~ 96387103 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1286053
AAGCATACATATTGTCACTGTGCTAGAGCAGTTCAGTTGTATTGTACATACATTATATTGTCTAATAATGTAccgtgtattgtattgtactgtattgtcaagtattgtattgtattcaatgtactgtgttgtattgtactgtactgtattgtactgtattgtactgtgttatactgtattgtactgtattgtatagtatagtactgTATGGTTAAGTACTGTATTGTATCATTCTGttttgtattgtactgtattgtattgtactgtatagtaaagtaatgtattgtattgtactgtattgtatagtattgtatagtactgcattgtattgtagtgtactgtataatattgtatagtactgtattgtagtgtattgtagtgtatgatattgtatagtactgtatagtagtTTATTGTAGTGTATAATATTGTATAGTGCTGTATTGTAGCGTATTGTACTGTATAATATTGTATAGTACTGTATTGCATAtaactgtattgtattgtactgtattgaattgtactgtattgtattgtactgtataatattgtatagtactgtattgtactgtataatTATATagtactgtattgtagtgtattgtattgtactgtattgcatataactgtattgtattgtactgtattgaatTGTACTGTAATGTGTAGTATTGTAACACATATATTATGGTCATGAGACAGTGTTAAAGTGTTCAGACAATcaaacatcaaaacaatgaaccttactgtattatactgaattgtattgtactataatgtgtagtattgtattgtattggtacACATATATAATGGTCATGAGACAGTATTAAAGTGTTCTTATCAAAACAATGAAccttactgtattgtattgtactataatgtgtagtattgtattgtactataatgtgtagtattgtattgtactataatgtgtagtattgtattgtactataatgtgtagtattgtattgtactataatgtgtagtattgtattgtactataatgtgtagtattgtattgtaacgGTACACATATATTATAATCATGAGGCAGTG

Function

NR:

description
PREDICTED: repetitive proline-rich cell wall protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1286053 True 1059 lncRNA 0.27 1 96386045 96387103

Neighbor

gene id symbol gene type direction distance location
LOC118937800 LOC106606337 coding upstream 84706 96221848 ~ 96301339 (+)
tbc1d16 LOC106606686 coding upstream 220651 96139773 ~ 96165394 (+)
LOC110539035 LOC106588841 coding upstream 247009 96124942 ~ 96139036 (+)
LOC110538773 LOC106606683 coding upstream 269487 96103366 ~ 96116558 (+)
LOC110538781 LOC106595186 coding upstream 305493 96072905 ~ 96080552 (+)
LOC110517345 LOC106596483 coding downstream 155767 96542870 ~ 96594168 (+)
LOC110512418 alg1 coding downstream 231136 96618239 ~ 96633339 (+)
LOC118937803 NA coding downstream 240005 96627108 ~ 96630599 (+)
LOC110494405 pigq coding downstream 250095 96637198 ~ 96670446 (+)
LOC110494408 NA coding downstream 284362 96671465 ~ 96672625 (+)
G1130379 NA non-coding upstream 382 96385406 ~ 96385663 (+)
G1130376 NA non-coding upstream 5244 96380588 ~ 96380801 (+)
G1130374 NA non-coding upstream 10366 96375426 ~ 96375679 (+)
G1130370 NA non-coding upstream 18733 96367043 ~ 96367312 (+)
G1130305 NA non-coding upstream 78923 96305868 ~ 96307122 (+)
G1130381 NA non-coding downstream 1169 96388272 ~ 96389118 (+)
G1130382 NA non-coding downstream 2031 96389134 ~ 96390421 (+)
G1130408 NA non-coding downstream 74568 96461671 ~ 96522096 (+)
G1130425 NA non-coding downstream 118981 96506084 ~ 96507660 (+)
G1130575 NA non-coding downstream 216845 96603948 ~ 96606084 (+)
LOC110538761 LOC106606716 other upstream 755470 95629494 ~ 95815227 (+)
G1129772 NA other upstream 866403 95519178 ~ 95519642 (+)
G1129613 LOC106601744 other upstream 1076348 95300784 ~ 95309697 (+)
G1129601 LOC106601741 other upstream 1118989 95266518 ~ 95267056 (+)
G1129591 LOC106601742 other upstream 1132722 95252420 ~ 95253323 (+)
G1130570 alg1 other downstream 231153 96618256 ~ 96633452 (+)
LOC118937804 LOC106591169 other downstream 291429 96676774 ~ 96702725 (+)
G1130780 LOC106606334 other downstream 775159 97162262 ~ 97163079 (+)
G1131438 NA other downstream 1433621 97820724 ~ 97822057 (+)
LOC118936514 smim22 other downstream 1872906 98259570 ~ 98268855 (+)

Expression


Co-expression Network