G1130425


Basic Information

Item Value
gene id G1130425
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 96506084 ~ 96507660 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1286114
ggacagcgatcactcacctctgattagacaaagagcttctggatatcaggacagagatcactcacctcggattagacaaagagcttctagatatcaggacagcgatcactcacctcggattagacaaagagcttctggatatcaggacagcgatcactcacCTCGGAtaagacaaagagcttctggatatcaggacagcgatcactacctcggattagacaaagagcttctggatatcaggacagagatcactcacctcggattagacaaagagcttctggatatcaggacagcgatcactcacctcggattagacaaagagcttctggatatcaggacagcgatcactacctcggattagacaaagagcttctggatatcaggacagcgatcactcacctcggattagacaaagagcttctggatatcaggacagcgatcactcacctcggattagacaaagagcttctggatatcaggacagcgatcactcacctcggattagacaaagagcttctggatatcaggacagtgatcccTCACCTCGGA
>TU1286115
ggacagcgatcactcacctctgattagacaaagagcttctggatatcaggacagagatcactcacctcggattagacaaagagcttctagatatcaggacagcgatcactcacctcggattagacaaagagcttctggatatcaggacagcgatcactcacctcggattagactaagagcttctggatatcaggacagcgatcactcacctcggattagacaaagagcttctggatatcaggacagcgatcactcacctcggattagacaaagagcttctggatatcaggacagcgatcactcacctcggattagacaaagagcttctggatatcaggacagtgatcccTCACCTCGGA
>TU1286116
ggacagcgatcactcacctctgattagacaaagagcttctggatatcaggacagagatcactcacctcggattagacaaagagcttctagatatcaggacagcgatcactcacctcggattagacaaagagcttctggatatcaggacagcgatcactcacCTCGGAtaagacaaagagcttctggatatcaggacagcgatcactacctcggattagacaaagagcttctggatatcaggacagagatcactcacctcggattagacaaagagcttctggatatcaggacagcgatcactcacctcggattagacaaagagcttctggatatcaggacagcgatcactcacctcggattagacaaagagcttctggatatcaggacagcgatcactcacctcggattagacaaagagcttctggatatcaggacagtgatcccTCACCTCGGA
>TU1286117
ggacagcgatcactcacctctgattagacaaagagcttctggatatcaggacagagatcactcacctcggattagacaaagagcttctagatatcaggacagcgatcactcacctcggattagacaaagagcttctggatatcaggacagcgatcactcacctcggattagacaaagagcttctggatatcaggacagcgatcactacctcggattagacaaagagcttctggatatcaggacagcgatcactcacctcggattagacaaagagcttctggatatcaggacagcgatcactcacctcggattagacaaagagcttctggatatcaggacagcgatcactcacctcggattagacaaagagcttctggatatcaggacagtgatcccTCACCTCGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1286114 False 549 lncRNA 0.48 5 96506084 96507660
TU1286115 False 359 lncRNA 0.48 2 96506084 96507660
TU1286116 False 454 lncRNA 0.48 4 96506084 96507660
TU1286117 True 406 lncRNA 0.48 3 96506084 96507660

Neighbor

gene id symbol gene type direction distance location
LOC118937800 LOC106606337 coding upstream 204745 96221848 ~ 96301339 (+)
tbc1d16 LOC106606686 coding upstream 340690 96139773 ~ 96165394 (+)
LOC110539035 LOC106588841 coding upstream 367048 96124942 ~ 96139036 (+)
LOC110538773 LOC106606683 coding upstream 389526 96103366 ~ 96116558 (+)
LOC110538781 LOC106595186 coding upstream 425532 96072905 ~ 96080552 (+)
LOC110517345 LOC106596483 coding downstream 35210 96542870 ~ 96594168 (+)
LOC110512418 alg1 coding downstream 110579 96618239 ~ 96633339 (+)
LOC118937803 NA coding downstream 119448 96627108 ~ 96630599 (+)
LOC110494405 pigq coding downstream 129538 96637198 ~ 96670446 (+)
LOC110494408 NA coding downstream 163805 96671465 ~ 96672625 (+)
G1130382 NA non-coding upstream 115663 96389134 ~ 96390421 (+)
G1130381 NA non-coding upstream 116966 96388272 ~ 96389118 (+)
G1130380 NA non-coding upstream 118981 96386045 ~ 96387103 (+)
G1130379 NA non-coding upstream 120421 96385406 ~ 96385663 (+)
G1130376 NA non-coding upstream 125283 96380588 ~ 96380801 (+)
G1130575 NA non-coding downstream 96288 96603948 ~ 96606084 (+)
G1130577 NA non-coding downstream 99139 96606799 ~ 96607098 (+)
G1130589 NA non-coding downstream 146683 96654343 ~ 96655726 (+)
LOC110538761 LOC106606716 other upstream 875509 95629494 ~ 95815227 (+)
G1129772 NA other upstream 986442 95519178 ~ 95519642 (+)
G1129613 LOC106601744 other upstream 1196387 95300784 ~ 95309697 (+)
G1129601 LOC106601741 other upstream 1239028 95266518 ~ 95267056 (+)
G1129591 LOC106601742 other upstream 1252761 95252420 ~ 95253323 (+)
G1130570 alg1 other downstream 110596 96618256 ~ 96633452 (+)
LOC118937804 LOC106591169 other downstream 170872 96676774 ~ 96702725 (+)
G1130780 LOC106606334 other downstream 654602 97162262 ~ 97163079 (+)
G1131438 NA other downstream 1313064 97820724 ~ 97822057 (+)
LOC118936514 smim22 other downstream 1752349 98259570 ~ 98268855 (+)

Expression


Co-expression Network