G1130556


Basic Information

Item Value
gene id G1130556
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 96532652 ~ 96541692 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1286306
gggtgttgtctgaacaggtataaagacaaggttggtgatatactgccccctggagggtgttgtctgaacaggtataaagacaaggttggtgatttactgccccctggagggtgttgtctgaacaggtataaagacatggttggtgatttactgccccctggagggtgtctgttgtctctatcattctctatggtgtGTACCTGCTTCAGGCAAGGCATGTGTATGAACAGCTGGCTTCTGAAGAATGCCACCCAAGGATACACCTCAGGGAAAGCTTTTAATTTATTGATGATTATACAGGTACAAATCATAGACCCAAAGGACTAACTGGAACTGATTATGAATGTAACCCACCTTCCACAATATCATTAAAACATTTATCCTCAGACTACCATACGGTGTATTTGATTGAAcaattcaaaaataaaatatattatcCTCTGATTGGGCCCAGTCTATGTGGTTTGcactcacagtaacaacaggcttacatctatactattgacaggtcactcacagtaacaacaggcttacatctatactattgacaggtcactcacagtaacaacaggcttacatctatactattgacaggtcactcacagtaacaacaggcttacatctatactattgacaggtcactcacagtaacaacaggcttacatctatactattgacaggtcactcacagtaacaacagacctacatctatactattgacaggtcactcacagtaacaacaggcttacatctatactattgacaggtcactcacagtaacaacagacctacatctatactattgacaggtcactcacagtaacaacaggcTTACATCTATACTACTGACAGgtcactcacagtaacaacagTTCTACATCTATACTACTGACAGgtcactcacagtaacaacagttctacatctatactattgacaggtcactcacagtaacaacaggcttacatctatactattgacaggtccctcacagtaacaacaggcttacatctatactattgacaagtcactcacagtaacaacaggcctacatctatactattgacaggtcactcacagtaacaacaggcttacatctatactattgacaggtcactcacagtaacaacaggtctacatctatactattgacaggtcactcacagtaacaacagTTCTACATCTATACTACTGACAAgtcactcacagtaacaacaggcctacatctatactattgacaggtcactcacagtaacaacaggcttacatctatactattgacaggtcactcacagtaacaacaggcctacatctatactattgacaggtcactcacagtaacaacaggcttacatctatactattgacaggtcactcacagtaacaacaggcTTACATCTATACTACTGACAGgtcactcacagtaacaacagTTCTACATCTATACTACTGACAGgtcactcacagtaacaacagttctacatctatactattgacaggtcactcacagtaacaacagttctacatctatactattgacaggtcactcacagtaacaacagttctacatctatactattgacaggtcactcacagtaacaacagttctacatctatactattgacaggtcactcacagtaacaacagttctacatctatactattgacaggtcactcacagtaacaacaggcctacatctatactattgacaggtccctcacagtaacaacaggcttacatctatactattgacaggtcactcacagtaacaacaggcttacatctatactattgacaggtcactcacagtaacaacaggcttacatctatactattgacaggtcactcacagtaacaacagACCTACATCTATACTACTGACAGGTCACTCACAGTAACAACCACCTTTTCACAGTTTGGACTCTACTAAATAAAGGTTCATCAAAATACAGTCCGGTGTCAACAACCAACATCCCAAATGGGACAAATTTAATCAGAGAAACAGTGATGTCAGTGTAGATCAGTGAGAGTGGTCGAGGCACAGATATCCAATGAAATTagtgtttaaatcaaatcaaatccaagttcatttgtcacgtgcgccgaatacaacagatgtacaccttacagtgaaatgctgacttacagcctctaaccaacagtgtagaccttacagtgaaatgctgacttacagcctctaaccaacagtgcagaaaaaggtattaggtgaacaatagatgagaaaagaaataaaacaacagtaaaaagacaggctatatacagtagagaggctatatacagtagagaggctatatacagtagagaggctatatacagtcaagaggctatatacagtagagaggctatatacagtcaagaggctatatacagtagagaggctatatacagtagagaggctatatacagtagagaggctatatacagtagagaggctatataaagtagacaggctatatacagtagaggctatatacagtagagaggctatatacagtagaggctataacagtagagaggctatatacagtagagaggctataacagtagagaggctatatacagtagagaggctatatacagtagagaggctataacagtagagaggctatatacagtagtgaggctatatacagtagagagactatatacagtagagaggctatatacagtagaggctctatacagtagagagactatatacagtagagaggctatatacagtagagaggctatatacagtggagaggctatatacagtagagaggctatatacagtagagaggctatatacagtcaagaggctatatacagtagagagactatatacagtagagaggctataacagtagagaggctatatacagtagagaggctatatacagtagagaggctataacagtagagaggctatatacagtagagaggctatatacagtagcgaggctatatacagtagcgaggctatatacagtagagaggctatatacagtagcgaggctataacagtagcgaggctataacagtagcgaggctataacagtagagaggctataacagtagcgaggctataacagtagagaggctacatacagacaccggttagtcaggctgattgaggtagtatgtagatctggttaaagtgactatgcatatatgatgaacagagagtagcagtagcgttaaagaggggttggcaggaaTGTGGGATATATGTCATTCTATGGGTTAATTTCGTGGTGCCTCTGCTCAGAAACATGTATGGGCTAAAACACACTCAGGACAGAActgagtgtgaaagagagagagagatgaacacagTTGGAACAGAATATCCCACATTCAGAACACAGTGGACCCGAGGGCAGGAATAATCC
>TU1286307
gggtgttgtctgaacaggtataaagacaaggttggtgatatactgccccctggagggtgttgtctgaacaggtataaagacaaggttggtgatttactgccccctggagggtgttgtctgaacaggtataaagacaaggttggtgatttactgccccctggagggtgttgtctgaacaggtataaagacaaggttgatgatttactg

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1286306 False 3395 lncRNA 0.40 11 96532652 96541692
TU1286307 True 207 lncRNA 0.46 3 96541202 96541692

Neighbor

gene id symbol gene type direction distance location
LOC110538851 LOC106601944 coding downstream 27414 96498544 ~ 96505238 (-)
LOC110516715 LOC103469064 coding downstream 96859 96392239 ~ 96435793 (-)
LOC118937802 fbxl16 coding downstream 166666 96314326 ~ 96365986 (-)
LOC118937801 NA coding downstream 219647 96209246 ~ 96313547 (-)
LOC118937923 NA coding downstream 537122 95995389 ~ 95995530 (-)
LOC110494398 clg11h16orf89 coding upstream 63682 96605374 ~ 96610119 (-)
eef2kmt fa86a coding upstream 91722 96633414 ~ 96637111 (-)
LOC110518479 LOC106591170 coding upstream 172598 96714290 ~ 96728931 (-)
LOC118937835 LOC106591170 coding upstream 187290 96728982 ~ 96753421 (-)
LOC110485334 LOC106596281 coding upstream 299919 96841611 ~ 96845185 (-)
G1130520 NA non-coding downstream 8706 96520869 ~ 96523946 (-)
G1130555 NA non-coding downstream 13429 96518201 ~ 96519223 (-)
G1130508 NA non-coding downstream 140471 96391576 ~ 96392181 (-)
G1130506 NA non-coding downstream 141633 96390623 ~ 96391019 (-)
G1130505 NA non-coding downstream 142351 96389587 ~ 96390301 (-)
G1130845 NA non-coding upstream 37938 96579630 ~ 96579987 (-)
G1130847 LOC106601992 non-coding upstream 40818 96582510 ~ 96583012 (-)
G1130842 NA non-coding upstream 52114 96593806 ~ 96594388 (-)
G1130841 NA non-coding upstream 58645 96600337 ~ 96600864 (-)
G1130860 NA non-coding upstream 84318 96626010 ~ 96632722 (-)
G1130145 NA other downstream 686369 95845107 ~ 95846283 (-)
G1130049 NA other downstream 906487 95625758 ~ 95626165 (-)
G1129951 NA other downstream 1138685 95392201 ~ 95393967 (-)
G1129544 NA other downstream 1439559 95092622 ~ 95093093 (-)
G1130893 NA other upstream 160715 96701694 ~ 96705588 (-)
LOC110487147 LOC106601974 other upstream 320451 96858442 ~ 96867462 (-)
LOC110519445 smg1 other upstream 434483 96898792 ~ 97043408 (-)
LOC110515892 syt17 other upstream 561798 97078111 ~ 97137134 (-)

Expression


Co-expression Network