G1130570 (alg1)


Basic Information

Item Value
gene id G1130570
gene name alg1
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 96618256 ~ 96633452 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1286334
CAAACATGGCGGATGCCGGTGCATCTATGACTCTAGCGACAATTTCACTGATAGGTTTCGCATTACTGGCAGGGTTTTACCTGACCACTTTAAATGCACTATGGACACTGGTCTCCGTTACTGTTACTGCCGTGTTGGTGTCCCAGTTATTGCGGAAGTTACGGAGAAGAGACGCGTTGACGGAGCGGCGTGTATGTGTGCTGGTTCTGGGGGATATCGGACGCAGCCCTCGCATGCAGTACCATGCCCTTTCACTCAGCAAACACGGCTACAGCGTAACGTTTGTTGGATTCCCTGGTACCAAGCCTCATCAGGATGTGATTGGAGATGAGAGGATCACAATCATCCCAATCACAGAACTTAAAGGACTCCAAGtGGGACCTAGGATGGTGAGCTATGTTACCAAGGTGATTCTCCAGTCCCTGCAGCTTCTCCTGGTGTTATTGAAGACTGATGTCCAGTCCCATATTCTCATGCAGAATCCTCCAGGACTGCCCAGTATAGTGGTGACATGGCTGGTGTGTGGTCTGAGAGGATCCAGGTTCATCATTGACTGGCACAACTACGGCTACACCATCATGGCCCTCTCACACGGCCCGGACCACCCCATCGTCAGGCTGGCACAGTGGTATGAGCAGTTGTTTGGGCGATTCTCCAGCCATAACCTTTGTGTCACCAACGCTATGAAGGAAGACCTCCAGAACAACTGGAACATCAGGGCGACCACATTGTATGACAAGCCACCTGCTATCTTCAAGGAGACTTCAGTAGACCTAAAGCACCAGCTGTTCATGAGGCTGGCCAAGA
>TU1286335
GGTGACATGGCTGGTGTGTGGTCTGAGAGGATCCAGGTTCATCATTGACTGGCACAACTACGGCTACACCATCATGGCCCTCTCACACGGCCCGGACCACCCCATCGTCAGGCTGGCACAGTGGTATGAGCAGTTGTTTGGGCGATTCTCCAGCCATAACCTTTGTGTCACCAACGCTATGAAGGAAGACCTCCAGAACAACTGGAACATCAGGGCGACCACATTGTATGACAAGCCACCTGCTATCTTCAAGGAGACTTCAGTAGACCTAAAGCACCAGCTGTTCATGAGGCTGGCCAAGA
>TU1286333
ACGTGTTGTTTCAattccctgtgtgtttgtgtgagaccAGGTAAGGGTCCTCAGAAGGACCACTACAGGAAGCTGATCGACACCCTGAGCTTTGAGCACGTGAAGATCTGTACTCCATGGCTGGAGGCAGAGGACTACCCTGTTCTGCTAGGCTCAGCAGATCTGGGTGTTTGTCTCCATAAGTCGTCCAGTGGTCTGGACCTGCCTATGAAGGTGGTGGACATGTTTGgctgctgtctgcctgtctgtgccaTCCACTTCTACTGTCTACATGAGCTGGTGAAACACGAGGAGAACGGGTTGATCTTCAAAGACTCTGAGGAACTATCTGGACAGCTCAAGTCTCTTCTGTGGGACTTCCCTGGTTGTGAGGATGAGGGCAAACTGGGTCAGTTCAGGAGGAACCTCCGGGCCAGTGGGGGGCAGCGGTGGGACCAGAACTGGGACCAGAACGTCCTGCCTCTCCTCACTGCACCCTGACTCCCCTGTTAGACAGACCTCTTTACAGCAGCTGACTCATCCCCTCTCTACATCTTCGCTCCGTCTCAAACCCACTTCTTGAGCCTCCAATCTTGAACATTttaacagacgctcttatccagaacgacttacaggagaaattagggttaagtgctttgttCAAGGGAACATctacagatgtttcacctagactgctcggggattcaaaccagcgactttTAGGTTTCTGGCCCAAtcctcttaaccgctaggctacctgctctgaaccgctaggctacctgctctgaaccactaggctacctgctctgaaccgctaggctacctgctctgaaccgctaggctacctgctctgaaCCGCTAGGCTCCCTGCTctgaaccgctaggctacctgccctgaaccgctaggctacctgccctgaaccgctaggctacctgccctgaaccgctaggctacctgccctgaaccattaggctacctgctctgaaccgctaggctacctgctaccaaCTGCCACATGGTCCACTTTGAGGACCTGTCGGAAAGAGAGATTGTTACATCAGGCTAGtctttcctctgctctctctctctccccatttctctctctacttctgtGGATCTCTTCATTCCAGGCCGTTTTGATTCTCCTCTTAAACaacacggggcggcagggtagcctagtggttagagcgttggactagtaaccggaaggttgcaagttcaaacccccgagctgacaaggtacaaatctgtcgctctgcccctgaacaaggcagttaacccactcattgaaaataagaatttgttcttacctagtgaaataaaggtttaaattaaaaaaatgtataaatgggATATTTTCCACACAATGTAAATATTTTGATGTAAATAAAGACTTTATTACACAGTAAT
>TU1286336
ACGTGTTGTTTCAattccctgtgtgtttgtgtgagaccAGGTAAGGGTCCTCAGAAGGACCACTACAGGAAGCTGATCGACACCCTGAGCTTTGAGCACGTGAAGATCTGTACTCCATGGCTGGAGGCAGAGGACTACCCTGTTCTGCTAGGCTCAGCAGATCTGGGTGTTTGTCTCCATAAGTCGTCCAGTGGTCTGGACCTGCCTATGAAGGTGGTGGACATGTTTGgctgctgtctgcctgtctgtgccaTCCACTTCTACTGTCTACATGAGCTGGTGAAACACGAGGAGAACGGGTTGATCTTCAAAGACTCTGAGGAACTATCTGGACAGCTCAAGTCTCTTCTGTGGGACTTCCCTGGTTGTGAGGATGAGGGCAAACTGGGTCAGTTCAGGAGGAACCTCCGGGCCAGTGGGGGGCAGCGGTGGGACCAGAACTGGGACCAGAACGTCCTGCCTCTCCTCACTGCACCCTGACTCCCCTGTTAGACAGACCTCTTTACAGCAGCTGACTCATCCCCTCTCTACATCTTCGCTCCGTCTCAAACCCACTTCTTGAGCCTCCAATCTTGAACATTttaacagacgctcttatccagaacgacttacaggagaaattagggttaagtgctttgttCAAGGGAACATctacagatgtttcacctagactgctcggggattcaaaccagcgactttTAGGTTTCTGGCCCAAtcctcttaaccgctaggctacctgctctgaaccgctaggctacctgctaccaaCTGCCACATGGTCCACTTTGAGGACCTGTCGGAAAGAGAGATTGTTACATCAGGCTAGtctttcctctgctctctctctctccccatttctctctctacttctgtGGATCTCTTCATTCCAGGCCGTTTTGATTCTCCTCTTAAACaacacggggcggcagggtagcctagtggttagagcgttggactagtaaccggaaggttgcaagttcaaacccccgagctgacaaggtacaaatctgtcgctctgcccctgaacaaggcagttaacccactcattgaaaataagaatttgttcttacctagtgaaataaaggtttaaattaaaaaaatgtataaatgggATATTTTCCACACAATGTAAATATTTTGATGTAAATAAAGACTTTATTACACAGTAAT
>TU1286341
ACGTGTTGTTTCAattccctgtgtgtttgtgtgagaccAGGTAAGGGTCCTCAGAAGGACCACTACAGGAAGCTGATCGACACCCTGAGCTTTGAGCACGTGAAGATCTGTACTCCATGGCTGGAGGCAGAGGACTACCCTGTTCTGCTAGGCTCAGCAGATCTGGGTGTTTGTCTCCATAAGTCGTCCAGTGGTCTGGACCTGCCTATGAAGGTGGTGGACATGTTTGgctgctgtctgcctgtctgtgccaTCCACTTCTACTGTCTACATGAGCTGGTGAAACACGAGGAGAACGGGTTGATCTTCAAAGACTCTGAGGAACTATCTGGACAGCTCAAGTCTCTTCTGTGGGACTTCCCTGGTTGTGAGGATGAGGGCAAACTGGGTCAGTTCAGGAGGAACCTCCGGGCCAGTGGGGGGCAGCGGTGGGACCAGAACTGGGACCAGAACGTCCTGCCTCTCCTCACTGCACCCTGACTCCCCTGTTAGACAGACCTCTTTACAGCAGCTGACTCATCCCCTCTCTACATCTTCGCTCCGTCTCAAACCCACTTCTTGAGCCTCCAATCTTGAACATTttaacagacgctcttatccagaacgacttacaggagaaattagggttaagtgctttgttCAAGGGAACATctacagatgtttcacctagactgctcggggattcaaaccagcgactttTAGGTTTCTGGCCCAAtcctcttaaccgctaggctacctgctctgaaccgctaggctacctgctctgaaccactaggctacctgctctgaaccgctaggctacctgctctgaaccgctaggctacctgctctgaaccgctaggctacctgctaccaaCTGCCACATGGTCCACTTTGAGGACCTGTCGGAAAGAGAGATTGTTACATCAGGCTAGtctttcctctgctctctctctctccccatttctctctctacttctgtGGATCTCTTCATTCCAGGCCGTTTTGATTCTCCTCTTAAACaacacggggcggcagggtagcctagtggttagagcgttggactagtaaccggaaggttgcaagttcaaacccccgagctgacaaggtacaaatctgtcgctctgcccctgaacaaggcagttaacccactcattgaaaataagaatttgttcttacctagtgaaataaaggtttaaattaaaaaaatgtataaatgggATATTTTCCACACAATGTAAATATTTTGATGTAAATAAAGACTTTATTACACAGTAAT

Function

symbol description
alg1 Predicted to enable mannosyltransferase activity. Predicted to be involved in protein glycosylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Ik. Orthologous to human ALG1 (ALG1 chitobiosyldiphosphodolichol beta-mannosyltransferase).

NR:

description
chitobiosyldiphosphodolichol beta-mannosyltransferase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1286334 False 807 TUCP 0.51 6 96618256 96623345
TU1286335 False 302 TUCP 0.53 3 96621389 96623345
TU1286333 False 1390 TUCP 0.50 4 96630566 96633452
TU1286336 False 1170 TUCP 0.48 5 96630566 96633452
TU1286341 True 1258 TUCP 0.49 5 96630566 96633452

Neighbor

gene id symbol gene type direction distance location
LOC110517345 LOC106596483 coding upstream 24088 96542870 ~ 96594168 (+)
LOC118937800 LOC106606337 coding upstream 316917 96221848 ~ 96301339 (+)
tbc1d16 LOC106606686 coding upstream 452862 96139773 ~ 96165394 (+)
LOC110539035 LOC106588841 coding upstream 479220 96124942 ~ 96139036 (+)
LOC110538773 LOC106606683 coding upstream 501698 96103366 ~ 96116558 (+)
LOC110494405 pigq coding downstream 3746 96637198 ~ 96670446 (+)
LOC110494408 NA coding downstream 38013 96671465 ~ 96672625 (+)
LOC118937804 LOC106591169 coding downstream 43322 96676774 ~ 96702725 (+)
LOC110485332 LOC105030590 coding downstream 134939 96768391 ~ 96838680 (+)
LOC118937805 LOC106601973 coding downstream 236470 96869922 ~ 96872737 (+)
G1130577 NA non-coding upstream 11158 96606799 ~ 96607098 (+)
G1130575 NA non-coding upstream 12172 96603948 ~ 96606084 (+)
G1130408 NA non-coding upstream 96160 96461671 ~ 96522096 (+)
G1130425 NA non-coding upstream 110596 96506084 ~ 96507660 (+)
G1130382 NA non-coding upstream 227835 96389134 ~ 96390421 (+)
G1130589 NA non-coding downstream 20891 96654343 ~ 96655726 (+)
G1130594 NA non-coding downstream 48740 96682192 ~ 96683954 (+)
G1130598 NA non-coding downstream 57174 96690626 ~ 96690906 (+)
G1130604 NA non-coding downstream 73226 96706678 ~ 96707052 (+)
LOC110538761 LOC106606716 other upstream 987681 95629494 ~ 95815227 (+)
G1129772 NA other upstream 1098614 95519178 ~ 95519642 (+)
G1129613 LOC106601744 other upstream 1308559 95300784 ~ 95309697 (+)
G1129601 LOC106601741 other upstream 1351200 95266518 ~ 95267056 (+)
G1129591 LOC106601742 other upstream 1364933 95252420 ~ 95253323 (+)
G1130780 LOC106606334 other downstream 528810 97162262 ~ 97163079 (+)
G1131438 NA other downstream 1187272 97820724 ~ 97822057 (+)
LOC118936514 smim22 other downstream 1626557 98259570 ~ 98268855 (+)
G1132060 NA other downstream 2091405 98724857 ~ 98725197 (+)

Expression


Co-expression Network